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Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains
(SOC BRASIL GENETICARIBEIRAO PRET, 2012)
The Xylella fastidiosa comparative genomic database is a scientific resource with the aim to provide a user-friendly interface for accessing high-quality manually curated genomic annotation and comparative sequence analysis, ...
Comparing de novo and reference-based transcriptome assembly strategies by applying them to the blood-sucking bug Rhodnius prolixus
(Elsevier B. V., 2015-05-22)
High Throughput Sequencing capabilities have made the process of assembling a transcriptome easier, whether or not there is a reference genome. But the quality of a transcriptome assembly must be good enough to capture the ...
De novo genome assembly of the cichlid fish Astatotilapia latifasciata reveals a higher level of genomic polymorphism and genes related to B chromosomes
(2019-01-01)
Supernumerary B chromosomes (Bs) are accessory elements to the regular chromosome set (As) and have been observed in a huge diversity of eukaryotic species. Although extensively investigated, the biological significance ...
De Novo Assembly and Transcriptome Analysis of Contrasting Sugarcane Varieties
(Public Library ScienceSan FranciscoEUA, 2014)
An Atlas of Plant Transposable Elements
(2021-01-01)
Advances in genomic sequencing have recently offered vast opportunities for biological exploration, unraveling the evolution and improving our understanding of Earth biodiversity. Due to distinct plant species characteristics ...
Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane
(Cold Spring Harbor Lab Press, Publications Dept, 2003-12-01)
To contribute to our understanding of the genome complexity of sugarcane, we undertook a large-scale expressed sequence tag (EST),program. More than 260,000 cDNA clones were partially sequenced from 26 standard cDNA libraries ...
Phylogenomics from Whole Genome Sequences Using aTRAM
(Oxford University Press, 2017-03-06)
Novel sequencing technologies are rapidly expanding the size of data sets that can be applied to phylogenetic studies. Currently the most commonly used phylogenomic approaches involve some form of genome reduction. While ...
De Novo Transcriptome Assembly for the Tropical Grass Panicum maximum Jacq
(Public Library ScienceSan FranciscoEUA, 2013)
A coffee berry borer (Hypothenemus hampei) genome assembly reveals a reduced chemosensory receptor gene repertoire and male-specific genome sequences
(2021-12-01)
Coffee berry borer—CBB (Hypothenemus hampei) is a globally important economic pest of coffee (Coffea spp.). Despite current insect control methods for managing CBB, development of future control strategies requires a better ...
Genomic organization and transcription analysis of the 195-bp satellite DNA in Trypanosoma cruzi
(ELSEVIER SCIENCE BV, 2008)
The 195-bp satellite DNA is the most abundant Trypanosoma cruzi repetitive sequence. Here we show by RNA blotting and RT-PCR that 195 SAT is intensely transcribed. We observed a positive correlation between the level of ...