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Genome-wide hairpins datasets of animals and plants for novel miRNA prediction
(Elsevier, 2019-08)
This article makes available several genome-wide datasets, which can be used for training microRNA (miRNA) classifiers. The hairpin sequences available are from the genomes of: Homo sapiens, Arabidopsis thaliana, Anopheles ...
Involvement of plastid, mitochondrial and nuclear genomes in plant-to-plant horizontal gene transfer
(Polskie Towarzystwo Botaniczne, 2014-12)
This review focuses on plant-to-plant horizontal gene transfer (HGT) involving the three DNA-containing cellular compartments. It highlights the great incidence of HGT in the mitochondrial genome (mtDNA) of angiosperms, ...
Mechanistic insights into the pathogenesis of microtubule‐targeting agent‐induced peripheral neuropathy from pharmacogenetic and functional studies
(Wiley Blackwell Publishing, Inc, 2022-01)
Chemotherapy-induced peripheral neuropathy (CIPN) is a common dose-limiting toxicity that affects 30%-40% of patients undergoing cancer treatment. Although multiple mechanisms of chemotherapy-induced neurotoxicity have ...
Selection of immunobiotic ligilactobacillus salivarius strains from the intestinal tract of wakame-fed pigs: Functional and genomic studies
(MDPI AG, 2020-11)
In this article, Ligilactobacillus salivarius FFIG strains, isolated from the intestinal tract of wakame-fed pigs, are characterized according to their potential probiotic properties. Strains were evaluated by studying ...
Molecular basis of a bacterial-amphibian symbiosis revealed by comparative genomics, modeling, and functional testing
(Nature Publishing Group, 2021-10)
The molecular bases for the symbiosis of the amphibian skin microbiome with its host are poorly understood. Here, we used the odor-producer Pseudomonas sp. MPFS and the treefrog Boana prasina as a model to explore bacterial ...
Draft genome sequence of the feruloyl esterase-producing strain lactobacillus fermentum CRL1446, a probiotic for malnutrition
(American Society for Microbiology, 2018-05)
We report here the draft genome sequence of Lactobacillus fermentum CRL1446 (2,148,781 bp, 51.4% G+C content). This strain exhibits feruloyl esterase activity and important technological and probiotic properties. Because ...
RDAVIDWebService: a versatile R interface to DAVID
(Oxford University Press, 2013-08)
The RDAVIDWebService package provides a class-based interface from R programs/scripts to fully access/control the database for annotation, visualization and integrated discovery, without the need for human interaction on ...
Beyond genomic selection: The animal model strikes back (one generation)!
(Wiley Blackwell Publishing, Inc, 2017-06)
Genome inheritance is by segments of DNA rather than by independent loci. We introduce the ancestral regression (AR) as a recursive system of simultaneous equations, with grandparental path coefficients as novel parameters. ...
A balance between circular and linear forms of the dengue virus genome is crucial for viral replication
(Cold Spring Harbor Laboratory Press, 2010-12)
The plasticity of viral plus strand RNA genomes is fundamental for the multiple functions of these molecules. Local and long-range RNA - RNA interactions provide the scaffold for interacting proteins of the translation, ...
CRISPR/Cas9 and genetic screens in malaria parasites : small genomes, big impact
(Portland Press, 2022-06)
The ∼30 Mb genomes of the Plasmodium parasites that cause malaria each encode ∼5000 genes, but the functions of the majority remain unknown. This is due to a paucity of functional annotation from sequence homology, which ...