Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees

Artículos de revistas

Fecha

2019-09-01

Registro en:

Conservation Genetics Resources. Dordrecht: Springer, v. 11, n. 3, p. 329-331, 2019.

1877-7252

http://hdl.handle.net/11449/186034

10.1007/s12686-018-1077-1

WOS:000480748400020

https://repositorioslatinoamericanos.uchile.cl/handle/2250/5367086

Autor

Universidade de São Paulo (USP)

Thunen Inst Forest Genet

Inst Florestal Sao Paulo

Univ Autonoma Gabriel Rene Moreno

IIAP

Univ Guyane

Univ Bordeaux

Universidade Estadual Paulista (Unesp)

Institución

Universidade Estadual Paulista (Brasil)

Resumen

We developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed.

Materias

DNA fingerprints

Geographical origin

MiSeq

RADSeq

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