info:eu-repo/semantics/article
Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
Fecha
2014-10Registro en:
Malaspinas, Anna Sapfo; Tange, Ole; Moreno Mayar, José Víctor; Rasmussen, Morten; DeGiorgio, Michael; et al.; Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS); Oxford University Press; Bioinformatics (Oxford, England); 30; 20; 10-2014; 2962-2964
1367-4811
CONICET Digital
CONICET
Autor
Malaspinas, Anna Sapfo
Tange, Ole
Moreno Mayar, José Víctor
Rasmussen, Morten
DeGiorgio, Michael
Wang, Yong
Valdiosera, Cristina E.
Politis, Gustavo Gabriel
Willerslev, Eske
Nielsen, Rasmus
Resumen
SUMMARY: We present bammds, a practical tool that allows visualization of samples sequenced by second-generation sequencing when compared with a reference panel of individuals (usually genotypes) using a multidimensional scaling algorithm. Our tool is aimed at determining the ancestry of unknown samples-typical of ancient DNA data-particularly when only low amounts of data are available for those samples.