Artículos de revistas
Microbial Diversity Associated With Algae, Ascidians And Sponges From The North Coast Of São Paulo State, Brazil
Registro en:
Microbiological Research. , v. 165, n. 6, p. 466 - 482, 2010.
9445013
10.1016/j.micres.2009.09.005
2-s2.0-77956176168
Autor
Menezes C.B.A.
Bonugli-Santos R.C.
Miqueletto P.B.
Passarini M.R.Z.
Silva C.H.D.
Justo M.R.
Leal R.R.
Fantinatti-Garboggini F.
Oliveira V.M.
Berlinck R.G.S.
Sette L.D.
Institución
Resumen
Little is known about the microbial diversity associated with marine macroorganisms, despite the vital role microorganisms may play in marine ecosystems. The aim of the present study was to investigate the diversity of bacteria and fungi isolated from eight marine invertebrate and one algae samples. Data derived from ARDRA and sequencing analyses allowed the identification of marine-derived microorganisms isolated from those samples. Microbial strains identified up to the genus level revealed 144 distinct ribotypes out of 256 fungal strains and 158 distinct ribotypes out of 181 bacterial strains. Filamentous fungi were distributed among 24 different genera belonging to Ascomycota, Zygomycota and Basidiomycota, some of which had never been reported in the literature as marine invertebrate-inhabiting fungi (Pestalotiopsis, Xylaria, Botrysphaeria and Cunnninghamella). Bacterial isolates were affiliated to 41 different genera, being Bacillus, Ruegeria, Micrococcus, Pseudovibrio and Staphylococcus the most abundant ones. Results revealed an unexpected high microbial diversity associated to the macroorganisms which have been collected and suggested the selection of certain microbial taxonomic groups according to the host. The combined data gathered from this investigation contribute to broaden the knowledge of microbial diversity associated to marine macroorganisms, including as a promising source for the discovery of new natural products. © 2009 Elsevier GmbH. 165 6 466 482 Alves, A., Phillips, A.J.L., Henriques, I., Correia, A., Rapid differentiation of species of Botryosphaeriaceae by PCR fingerprinting (2007) Res Microbiol, 158, pp. 112-121 Anand, T.P., Bhat, A.W., Shouche, Y.S., Roy, U., Siddharth, J., Sarma, S.P., Antimicrobial activity of marine bacteria associated with sponges from the waters off the coast of South East India (2006) Microbiol Res, 161 (3), pp. 252-262 Baker, P.W., Kennedy, J., Dobson, A.D.W., Marchesi, J.R., Phylogenetic diversity and antimicrobial activities of fungi associated with Haliclona simulans isolated from Irish coastal waters Mar Biotechnol, , 200810.1007/s10126-008-9169-7 Blunt, J.W., Copp, B.R., Hu, W.P., Munro, M.H.G., Northcote, P.T., Prinsep, M.R., Marine natural products (2008) Nat Prod Rep, 25, pp. 35-94 Bonugli-Santos, R.C., Durrant, L.R., da Silva, M., Sette, L.R., Production of laccase, manganese peroxidase and lignin peroxidase by Brazilian marine-derived fungi (2009) Enzyme Microbial Technol, , 10.1016/j.enzmictec.2009.07.014 Bredholdt, H., Galatenko, O.A., Engelhardt, K., Fjaervik, E., Terekhova, L.P., Zotchev, S.B., Rare actinomycete bacteria from the shallow water sediments of the Trondheim fjord, Norway: isolation, diversity and biological activity (2007) Environ Microbiol, 9 (11), pp. 2756-2764 Brettar, I., Christen, R., Hofle, M.G., Rheinheimera baltica gen. nov., sp. nov., a blue-coloured bacterium isolated from the central Baltic Sea (2002) Int J Syst Evol Microbiol, 52, pp. 1851-1857 Brück, T.B., Brück, W.M., Santiago-Vázquez, L.Z., McCarthy, P.J., Kerr, R.G., Diversity of the bacterial communities associated with the azooxanthellate deep water octocorals Leptogorgia minimata, Iciligorgia schrammi, and Swiftia exertia (2007) Mar Biotechnol, 9, pp. 561-576 Bugni, T.S., Ireland, C.M., Marine-derived fungi: a chemically and biologically diverse group of microorganisms (2004) Nat Prod Rep, 21, pp. 143-163 Cabaj, A., Kosakowska, A., Iron-dependent growth of and siderophore production by two heterotrophic bacteria isolated from brackish water of the southern Baltic Sea (2007) Microbiol Res Campbell, B.J., Christian, J., Kostka, J.E., Luther, G.W., Cary, S.C., Growth and phylogenetic properties of novel bacteria belonging to the Epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents (2001) Appl Environ Microbiol, 67, pp. 4566-4572 Celestino, K.R.S., Cunha, R.B., Felix, C.R., Characterization of a Β-glucanase produced by Rhizopus microspores var. microsporus, and its potential for application in the brewing industry (2006) BMC Biochem, 7, p. 23 Chelossi, E., Mancini, I., Sepčić, K., Turk, T., Faimali, M., Comparative antibacterial activity of polymeric 3-alkylpyridinium salts isolated from the Mediterranean sponge Reniera sarai and their synthetic analogues (2006) Biomol Eng, 23 (6), pp. 317-323 Ciavatta, M.L., Lopez-Gresa, M.P., Gavagnin, M., Nicoletti, R., Manzo, E., Mollo, E., Cytosporin-related compounds from the marine-derived fungus Eutypella scoparia (2008) Tetrahedron, 64, pp. 5365-5369 Comeau, A.M., Buenaventura, E., Suttle, C.A.A., Persistent, productive, and seasonally dynamic vibriophage population within Pacific oysters (Crassostrea gigas) (2005) Appl Environ Microbiol, 71 (9), pp. 5324-5331 Da Silva, M., Passarini, M.R.Z., Bonugli, R.C., Sette, L.D., Cnidarian-derived filamentous fungi from Brazil: isolation, characterization and RBBR decolourization screening (2008) Environ Technol, 29 (12), pp. 1331-1339 Dastager, S.G., Lee, J., Ju, Y., Park, D., Kim, C., Nocardioides sediminis sp. nov., isolated from a sediment sample (2009) Int J Syst Evol Microbiol, 59 (2), pp. 280-284 De, J., Ramaiah, N., Vardanyan, L., Detoxification of toxic heavy metals by marine bacteria highly resistant to mercury (2008) Mar Biotechnol, 10 (4), pp. 471-477 Dice, L.R., Measures of the amount of ecologic association between species (1945) Ecology, 26, pp. 297-302 Domsch, K.K., Gams, W., Anderson, T.H., (1980) Compendium of soil fungi, , Academic Press, New York Ellis, M.B., (1971) Dematiaceous Hyphomycetes, , Commonwealth Mycological Institute, Kew, UK Ettoumi, B., Raddadi, N., Borin, S., Daffonchio, D., Boudabous, A., Cherif, A., Diversity and phylogeny of culturable spore-forming Bacilli isolated from marine sediments (2009) J Basic Microbiol, , 10.1002/jobm.200800306 Farris, M.H., Olson, J.B., Detection of Actinobacteria cultivated from environmental samples reveals bias in universal primers (2007) Lett Appl Microbiol, 45, pp. 376-381 Fiedler, H., Bruntner, C., Bull, A.T., Ward, A.C., Goodfellow, M., Potterat, O., Marine actinomycetes as a source of novel secondary metabolites (2005) Antonie van Leeuwenhoek, 87, pp. 37-42 Fraune, S., Bosch, T.C.G., Long-term maintenance of species-specific bacterial microbiota in the basal metazoan Hydra (2007) Proc Natl Acad Sci USA, 104 (32), pp. 13146-13151 Fukunaga, Y., Kurahashi, M., Tanaka, K., Yanagi, K., Yokota, A., Harayama, S., Pseudovibrio ascidiaceicola sp. nov., isolated from ascidians (sea squirts) (2006) Int J Syst Evol Microbiol, 56, pp. 343-347 Gao, Z., Li, B., Zheng, C., Wang, G., Molecular detection of fungal communities in the Hawaiian marine sponges Suberites zeteki and Mycale armata (2008) Appl Environ Microbiol, pp. 6091-6101 Garnier, M., Labreuche, Y., Garcia, C., Robert, M., Nicolas, J.L., Evidence for the involvement of pathogenic bacteria in summer mortalities of the Pacific oyster Crassostrea gigas (2007) Microb Ecol, 53, pp. 187-196 Gomes, D.N.F., Cavalcanti, M.A.Q., Fernandes, M.J.S., Lima, D.M.M., Passavante, J.Z.O., Filamentous fungi isolated from sand and water of "Bairro Novo" and "Casa Caiada" beaches, Olinda, Pernambuco, Brazil (2008) Braz J Biol, 68 (3), pp. 577-582 Gontang, E.A., Fenical, W., Jensen, P.R., Phylogenetic diversity of Gram-positive bacteria cultured from marine sediments (2007) Appl Environ Microbiol, 73 (10), pp. 3272-3282 Gotelli, N.J., Entsminger, G.L., (2003) EcoSim: null models software for ecology, , Acquired Intelligence Inc. & Kesey-Bear, Burlington, VT 05465 Hentschel, U., Schmid, M., Wagner, M., Fieseler, L., Gernert, C., Hacker, J., Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola. (2001) FEMS Microbiol Ecol, 35, pp. 305-312 Heuer, H., Krsek, M., Baker, P., Smalla, K., Wellington, E.M.H., Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients (1997) Appl Environ Microbiol, 63, pp. 3233-3241 Holler, U., Wright, A.D., Matthee, G.F., Konig, G.M., Draeger, D., Aust, H.J., Fungi from marine sponges: diversity, biological activity and secondary metabolites (2000) Mycol Res, 104 (11), pp. 1354-1365 Hosoya, S., Yokota, A., Pseudovibrio japonicas sp. nov., isolated from coastal seawater in Japan (2007) Int J Syst Evol Microbiol, 57, pp. 1952-1955 Jensen, P.R., Fenical, W., Marine bacterial diversity as a resource for novel microbial products (1996) J Ind Microbiol Biotechnol, 17 (5), pp. 346-351 Jensen, P.R., Fenical, W., Secondary metabolites from marine fungi (2002) Fungi in marine environments, 7, pp. 293-315. , Fungal Diversity Press, Hong Kong Jensen, P.R., Williams, P.G., Oh, D.C., Zeigle, L., Fenical, W., Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora (2007) Appl Environ Microbiol, pp. 1146-1152 Kageyama, A., Takahashi, Y., Yasumoto-Hirose, M., Kasai, H., Shizuri, Y., Omura, S., Janibacter corallicola sp. nov., isolated from coral in Palau (2007) J Gen Appl Microbiol, 53, pp. 185-189 Kim, K.H., Roh, S.W., Chang, H.W., Nam, Y.D., Yoon, J.H., Jeon, C.O., Nocardioides basaltis sp. nov., isolated from black beach sand (2009) Int J Syst Evol Microbiol, 59 (1), pp. 42-47 Kimura, M., A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence (1980) J Mol Evol, 16, pp. 111-120 Klaus, J.S., Janse, I., Heikoop, J.M., Sanford, R.A., Fouke, B.W., Coral microbial communities, zooxanthellae and mucus along gradients of seawater depth and coastal pollution (2007) Environ Microbiol, 9 (5), pp. 1291-1305 Kohlmeyer, J., Kohlmeyer, E., The higher fungi (1979) Marine mycology, p. 690. , Academic Press, New York König, G.M., Kehraus, S., Seiber, S.F., Abdel-Lateff, A., Muller, D., Natural products from marine organisms and their associated microbes (2006) Chem Biochem, 7, pp. 229-238 Kurahashi, M., Yokota, A., Endozoicomonas elysicola gen. nov., sp. nov., a γ-proteobacterium isolated from the sea slug Elysia ornata (2007) Syst Appl Microbiol, 30, pp. 202-206 Kurtboke, D.I., Actinophages as indicators of actinomycete taxa in marine environments (2005) Antonie van Leeuwenhoek, 87, pp. 19-28 Lane, D.J., 16S/23S rRNA sequencing (1991) Nucleic acid techniques in bacterial systematics, pp. 115-147. , John Wiley & Sons, Chichester, M. Goodfellow, E. Stackebrandt (Eds.) Larsen, T.O., Smedsgaard, J., Nielsen, K.F., Hansen, M.E., Frisvad, J.C., Phenotypic taxonomy and metabolite profi{ligature}ling in microbial drug discovery (2005) Nat Prod Rep, 22, pp. 672-695 Le Crom, S., Schackwitz, W., Pennacchio, L., Magnuson, J.K., Culley, D.E., Collett, J.R., Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing (2009) Proc Natl Acad Sci, 106, pp. 16151-16156 Lee, K., Choo, Y.J., Giovannoni, S.J., Cho, J.C., Ruegeria pelagia sp. nov., isolated from the Sargasso Sea, Atlantic Ocean (2007) Int J Syst Evol Microbiol, 57, pp. 1815-1818 Lee, S.D., Kineococcus marinus sp. nov., isolated from marine sediment of the coast of Jeju (2006) Korea Int J Syst Evol Microbiol, 56 (6), pp. 1279-1283 Lee, S.D., Brevibacterium marinum sp. nov., isolated from seawater (2008) Int J Syst Evol Microbiol, 58 (2), pp. 500-504 Lee, S.D., Agrococcus jejuensis sp. nov., isolated from dried seaweed (2008) Int J Syst Evol Microbiol, 58 (10), pp. 2297-2300 Lewbart, G.A., Invertebrate medicine (2006) Blackwell Publishing Professional, , I.A. Ames (Ed.) Lin, Y., Wu, X., Feng, S., Jiang, G., Luo, J., Zhou, S., Five unique compounds: xyloketals from mangrove fungus Xylaria sp. from the South China Sea Coast (2001) J Org Chem, 66, pp. 6252-6256 Maldonado, L.A., Stach, J.E.M., Pathom-aree, W., Ward, A.C., Bull, A.T., Goodfellow, M., Diversity of cultivable actinobacteria in geographically widespread marine sediments (2005) Antonie van Leeuwenhoek, 87, pp. 11-18 Masuma, R., Yamaguchi, Y., Noumi, M., Omura, S., Namikoshi, M., Effect of sea water concentration on hyphal growth and antimicrobial metabolite production in marine fungi (2001) Mycoscience, 42, pp. 455-459 Millati, R., Edebo, L., Taherzadeh, M.J., Performance of Rhizopus, Rhizomucor, and Mucor in ethanol production from glucose, xylose, and wood hydrolyzates (2005) Enzyme Microbial Technol, 36, pp. 294-300 Mincer, T.J., Fenical, W., Jensen, P.R., Culture-dependent and culture-independent diversity within the obligate marine actinomycete genus Salinispora (2005) Appl Environ Microbiol, 71, pp. 7019-7028 Mitova, M., Tommonaro, G., Hentschel, U., Müller, W.E.G., De Rosa, S., Exocellular cyclic dipeptides from a ruegeria strain associated with cell cultures of Suberites domuncula (2004) Mar Biotechnol, 6, pp. 95-103 Mohamed, M., Cicirelli, E.M., Kan, J., Chen, F., Fuqua, C., Hill, R.T., Diversity and quorum-sensing signal production of Proteobacteria associated with marine sponges Naglaa (2008) Environ Microbiol, 10, pp. 75-86 Montalvo, N.F., Mohamed, N.M., Enticknap, J.J., Hill, R.T., Novel actinobacteria from marine sponges (2005) Antonie van Leeuwenhoek, 87, pp. 29-36 Muramatsu, Y., Uchino, Y., Kasai, H., Suzuki, K., Nakagawa, Y., Ruegeria mobilis sp. nov., a member of the Alphaproteobacteria isolated in Japan and Palau (2007) Int J Syst Evol Microbiol, 57, pp. 1304-1309 O'Donnell, K., Fusarium and its near relatives (1993) The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics, pp. 225-233. , CAB International, Wallingford, CT, D.R. Reynolds, J.W. Taylor (Eds.) Osinga, R., Armstrong, E., Burgess, J.G., Hoffmann, F., Reitner, J., Schumann-Kindel, G., Sponge-microbe associations and their importance for sponge bioprocess engineering (2001) Hydrobiologia, 461, pp. 55-62 Pimentel-Elardo, S.M., Tiro, L.P., Grozdanov, L., Hentschel, U., Saccharopolyspora cebuensis sp. nov., a novel actinomycete isolated from a Philippine sponge (Porifera) (2008) Int J Syst Evol Microbiol, 58 (3), pp. 628-632 Pitt, J.I., (1979) The genus Penicillium and its telemorphics states Eupenicillium and Talaromyces, , Academic Press, London Pitcher, D.G., Saunders, N.A., Owen, R.J., Rapid extraction of bacterial genomic DNA with guanidium thiocyanate (1989) Lett Appl Microbiol, 8, pp. 151-156 Prasannarai, K., Sridhar, K.R., Diversity and abundance of higher marine fungi on woody substrates along the west coast of India (2001) Curr Sci, 81 (3), pp. 304-311 Raghukumar, C., Marine fungal biotechnology: an ecological perspective (2008) Fungal Diversity, 31, pp. 19-35 Riesenfeld, C.S., Murray, A.E., Baker, B.J., Characterization of the microbial community and polyketide biosynthetic potential in the palmerolide-producing tunicate Synoicum adareanum (2008) J Nat Prod, 71, pp. 1812-1818 Rosenberg, E., Koren, O., Reshef, L., Efrony, R., Zilber-Rosenberg, I., The role of microorganisms in coral health, disease and evolution (2007) Nat Rev Microbiol, 5, pp. 355-362 Saitou, N., Nei, M., The neighbor-joining method: a new method for reconstructing phylogenetic trees (1987) Mol Biol Evol, 4, pp. 406-425 Salomon, C.E., Magarvey, N.A., Sherman, D.H., Merging the potential of microbial genetics with biological and chemical diversity: an even brighter future for marine natural product drug discovery (2004) Nat Prod Rep, 21, pp. 105-121 Salyers, A.A., Whitt, D.D., (1994) Bacterial pathogenesis: a molecular approach, , American Society for Microbiology Press, Washington, DC, USA Sertan-de Guzman, A.A., Predicala, R.Z., Bernardo, E.B., Neilan, B.A., Elardo, S.P., Mangalidan, G.C., Pseudovibrio denitrificans strain Z143-1, a heptylprodigiosin-producing bacterium isolated from a Philippine tunicate (2007) FEMS Microbiol Lett, 277 (2), pp. 188-196 Shieh, W.Y., Lin, Y.T., Jean, W.D., Pseudovibrio denitrificans gen. nov., sp. nov., a marine, facultatively anaerobic, fermentative bacterium capable of denitrification (2004) Int J Syst Evol Microbiol, 54, pp. 2307-2312 Schafer, H., Bernard, L., Courties, C., Lebaron, P., Servais, P., Pukall, R., Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations (2001) FEMS Microbiol Ecol, 34, pp. 243-253 Schirmer, A., Gadkari, R., Reeves, C.D., Ibrahim, F., DeLong, E.F., Hutchinson, C.R., Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissolute (2005) Appl Environ Microbiol, pp. 4840-4849 Sfanos, K., Harmody, D., Dang, P., Ledger, A., Pomponi, S., McCarthy, P., A molecular systematic survey of cultured microbial associates of deep-water marine invertebrates (2005) Syst Appl Microbiol, 28, pp. 242-264 Shnit-Orland, M., Kushmaro, A., Coralmucus-associated bacteria: a possible first line of defense (2009) FEMS Microbiol Ecol, 67, pp. 371-380 Surajit, D., Lyla, P.S., Ajmal Khan, S., Marine microbial diversity and ecology: importance and future perspectives (2006) Curr Sci, 90 (10), pp. 1325-1335 Tamura, K., Dudley, J., Nei, M., Kumar, S., MEGA4 - Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 (2007) Mol Biol Evol, 24, pp. 1596-1599 Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmou-gin, F., Higgins, D.G., The ClustalX windows interface: fl{ligature}exible strategies for multiple sequence alignment aided by quality analysis tools (1997) Nucleic Acids Res, 24, pp. 4876-4882 Toledo-Hernández, C., Zuluaga-Montero, A., Bones-González, A., Rodríguez, A.J., Sabat, A.M., Bayman, P., Fungi in healthy and diseased sea fans (Gorgonia ventalina): is Aspergillus sydowii always the pathogen? (2008) Coral Reefs, 27, pp. 707-714 Vasconcellos, S.P., Crespim, E., Cruz, G.F., Simioni, K.C.M., Neto, E.V.S., Marsaioli, A.J., Isolation, biodegradation ability and molecular detection of hydrocarbon degrading bacteria in petroleum samples from a Brazilian offshore basin (2009) Org Geochem, 40 (5), pp. 574-588 Venter, C.J., Remington, K., Heidelberg, J.F., Halpern, A.L., Rusch, D., Eisen, L.A., Environmental genome shotgun sequencing of the Sargasso Sea (2004) Science, 304, pp. 66-74 Vijaykrishna, D., Jeewon, R., Hyde, K.D., Molecular taxonomy, origins and evolution of freshwater Ascomycetes (2006) Fungal Diversity, 23, pp. 351-390 Vishnivetskaya, T.A., Petrova, M.A., Urbance, J., Ponder, M., Moyer, C.L., Gilichinsky, D.A., Bacterial community in ancient Siberian permafrost as characterized by culture and culture-independent methods (2006) Astrobiology, 6 (3), pp. 400-414 Wang, G., Diversity and biotechnological potential of the sponge-associated microbial consortia (2006) J Ind Microbiol Biotechnol, 33, pp. 545-551 Webster, N.S., Hill, R.T., The culturable microbial community of the Great Barrier Reef sponge Rhopaloeides odorabile is dominated by an α-Proteobacterium (2001) Mar Biol, 138, pp. 843-851 Zhang, H., Lee, Y.K., Zhang, W., Lee, H.K., Culturable actinobacteria from the marine sponge Hymeniacidon perleve: isolation and phylogenetic diversity by 16S rRNA gene-RFLP analysis (2006) Antonie van Leeuwenhoek, 90, pp. 159-169 Zhang, H., Zhang, W., Jin, Y., Jin, M., Yu, X., A comparative study on the phylogenetic diversity of culturable actinobacteria isolated from fi{ligature}ve marine sponge species (2008) Antonie van Leeuwenhoek, 93, pp. 241-248