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Comparative analysis of genotyping by sequencing and whole-genome sequencing methods in diversity studies of olea europaea l.
Olive, Olea europaea L., is a tree of great economic and cultural importance in the Mediterranean basin. Thousands of cultivars have been described, of which around 1200 are conserved in the different olive germplasm banks. ...
Characterisation of Neisseria meningitidis cc11/ET-15 variant by whole genome sequencing
(Fundação Oswaldo Cruz. Instituto Oswaldo Cruz., 2022)
Contribution of Yeast Artificial Chromosome-Based Physical Maps to the Final Assembly of the Trypanosoma cruzi Genome
(Humana Press, 2006)
This chapter describes the methodology used both in performing the electrophoretic karyotype of the protozoan parasite Trypanosoma cruzi and mapping the genetic markers of the chromosomal bands, the construction of ...
Increased accuracy of genomic predictions for growth under chronic thermal stress in rainbow trout by prioritizing variants from GWAS using imputed sequence data
(Wiley, 2021)
Through imputation of genotypes, genome-wide
association study (GWAS) and
genomic prediction (GP) using whole-genome
sequencing (WGS) data are cost-efficient
and feasible in aquaculture breeding schemes. The objective ...
Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study
(Elsevier, 2021)
Background: Drug resistance threatens global tuberculosis control. We aimed to examine mortality in patients with tuberculosis from high-burden countries, according to concordance or discordance of results from drug ...
Whole-genome sequencing of 1,171 elderly admixed individuals from São Paulo, Brazil
(Springer Nature, 2022)
As whole-genome sequencing (WGS) becomes the gold standard tool for studying population genomics and medical applications, data on diverse non-European and admixed individuals are still scarce. Here, we present a high-coverage ...
Whole genome sequencing accurately identifies resistance to extended spectrum β-lactams for major gram-negative bacterial pathogens
(Oxford University Press, 2017)
BACKGROUND:
There is marked interest in using DNA based methods to detect antimicrobial resistance (AMR) with targeted polymerase chain reaction (PCR) approaches increasingly being incorporated into clinical care. Whole ...
Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples
(American Society of Microbiology, 2017)
Whole-genome sequencing (WGS) of microbial pathogens from clinical samples is a highly sensitive tool used to gain a deeper understanding of the biology, epidemiology, and drug resistance mechanisms of many infections. ...
Comparison of Whole Genome Sequencing versus Standard Molecular Diagnostics for Species Identification in the Leishmania Viannia Subgenus.
(American Journal of Tropical Medicine and Hygiene, 2021)
The prognosis and treatment of New World tegumentary leishmaniasis is dependent on the infecting species, yet such species identification in the Leishmania Viannia subgenus poses a diagnostic challenge. Currently, speciation ...