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Automatic assignment of prokaryotic genes to functional categories using literature profiling.
(Public Library of Science, 2014)
The relation between hairpin formation by mitochondrial WANCY tRNAs and the occurrence of the light strand replication origin in Lepidosauria
(Elsevier, 2014)
Mitochondrial light strand DNA replication is initiated at light strand replication origins (OLs), short stem-loop hairpins formed by the heavy strand DNA. OL-like secondary structures are also formed by heavy strand DNA ...
GENIUS: Web server to predict local gene networks and key genes for biological functions
(2016)
GENIUS is a user-friendly web server that uses a novel machine learning algorithm to infer functional gene networks focused on specific genes and experimental conditions that are relevant to biological functions of interest. ...
Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales
(2012-11-23)
Background: Comparative genomics has provided valuable insights into the nature of gene
sequence variation and chromosomal organization of closely related bacterial species. However,
questions about the biological ...
Between the cross and the sword: the crisis of the gene concept
(2007-03)
Challenges to the gene concept have shown the difficulty of preserving the classical molecular concept, according to which a gene is a stretch of DNA encoding a functional product (polypeptide or RNA). The main difficulties ...
A Pairwise Probabilistic Framework To Infer Functional Gene Networks And Identify Key Genes In Response To Perturbations
(2017)
It is second nature nowadays to use changes in gene expression to identify relevant genes in response to a perturbation or in a developmental transition. However, many key genes for an organism’s response are not regulated ...
A Pairwise Probabilistic Framework To Infer Functional Gene Networks And Identify Key Genes In Response To Perturbations
(2017)
It is second nature nowadays to use changes in gene expression to identify relevant genes in
response to a perturbation or in a developmental transition. However, many key genes for an
organism’s response are not regulated ...
Discriminative local subspaces in gene expression data for effective gene function prediction
(2012)
MOTIVATION: Massive amounts of genome-wide gene expression data have become available, motivating the development of computational approaches that leverage this information to predict gene function. Among successful ...
Discriminative local subspaces in gene expression data for effective gene function prediction
(2012)
MOTIVATION:Massive amounts of genome-wide gene expression data have become available, motivating the development of computational approaches that leverage this information to predict gene function. Among successful approaches, ...