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Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

Pillay, Sureshnee; Giandhari, Jennifer; Tegally, Houriiyah; Wilkinson, Eduan; Chimukangara, Benjamin; Lessells, Richard; Moosa, Yunus; Mattison, Stacey; Gazy, Inbal; Fish, Maryam; Singh, Lavanya; Khanyile, Khulekani Sedwell; San, James Emmanuel; Fonseca, Vagner; Giovanetti, Marta; Alcantara, Luiz Carlos; Oliveira, Tulio de (MDPI, 2020)

Complete mitochondrial genome of the three Colombian Caribbean loggerhead sea turtles, using next-generation sequencing

Hernández-Fernández, Javier; Delgado Cano, David Arley

The loggerhead turtle, Caretta caretta (Linnaeus, 1758), is an endangered sea turtle in Colombian Caribbean beach. In the present study was sequenced the complete mitochondrial DNA of three loggerhead turtles using ...

Specific Quality Control is essential for Next-Generation Sequencing data usage: case studies in Illumina data from algae, yeasts and plants.

PORTO, B. N.; STEINDORFF, A. S.; BRITO, L. S. de; FORMIGHIERI, E. F. (2016)

Illumina sequencing-based analysis of a microbial community enriched under anaerobic methane oxidation condition coupled to denitrification revealed coexistence of aerobic and anaerobic methanotrophs

Siniscalchi, Luciene Alves Batista; Leite, Laura Rabelo; Oliveira, Guilherme Correa de; Chernicharo, Carlos Augusto Lemos; Araújo, Juliana Calabria de (Springer, 2018)

Draft genome sequence data of maqui (Aristotelia chilensis) and identification of SSR markers

Bastías A.; Correa F.; Rojas P.; Martin C.; Pérez-Diaz J.; Yáñez C.; Cuevas M.; Verdugo R.; Sagredo B. (Elsevier Inc., 2019)

Development and characterization of twenty-two polymorphic microsatellite markers for the leafcutter ant, Acromyrmex lundii, utilizing Illumina sequencing

Harvard Univ; Univ Republica; Universidade Estadual Paulista (Unesp); Univ Georgia; Univ Colorado (Springer, 2014-06-01)

We isolated and characterized a total of 22 microsatellite loci for the leafcutter ant, Acromyrmex lundii. The loci were screened for 24 individuals from southern Brazil and Uruguay. The number of alleles per locus ranged ...

Comparative clinical sample preparation of DNA and RNA viral nucleic acids for a commercial deep sequencing system (Illumina MiSeq (R))

Universidade Estadual Paulista (Unesp); Universidade Federal do Paraná (UFPR); University of Illinois (Elsevier B.V., 2015-08-01)

Sequence-independent methods for viral discovery have been widely used for whole genome sequencing of viruses. Different protocols for viral enrichment, library preparation and sequencing have increasingly been more available ...

Identification and characterization of a new potyvirus infecting cucurbits

Perotto, Maria Cecilia; Pozzi, Elizabeth Alicia; Celli, Marcos Giovani; Luciani, Cecilia Elizabeth; Mitidieri, Mariel Silvina; Conci, Vilma Cecilia (Springer Wien, 2018-03)

A new potyvirus, tentatively named cucurbit vein banding virus (CVBV), was identified in crops of cucurbits in San Pedro (Buenos Aires, Argentina). The complete genome sequences of two isolates of CVBV were obtained by ...

Microsatellite markers for Bokermannohyla species (Anura, Hylidae) from the Brazilian Cerrado and Atlantic Forest domains

Universidade Estadual Paulista (Unesp); Cornell Univ (Brill Academic Publishers, 2014-01-01)

We characterized 22 polymorphic microsatellite markers for the Brazilian treefrog Bokermannohyla ibitiguara and tested their cross-amplification in B. alvarengai, B. circumdata and B. hylax. Our focal species occurs in ...

High-throughput sequencing reveals diverse oomycete communities in oligotrophic peat bog micro-habitat

Singer, David; Lara, Enrique; Steciow, Mónica Mirta; Seppey, Christophe V. W.; Paredes, Noelia Ivana; Pillonel, Amandine; Oszako, Tomasz; Belbahri, Lassâad (2016)

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