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A new Plasmodium vivax reference genome for South American isolates
(BioMed Central, 2023)
Background: Plasmodium vivax is the second most important cause of human malaria worldwide, and accounts for the majority of malaria cases in South America. A high-quality reference genome exists for Papua Indonesia (PvP01) ...
Identification and characterization of regions of difference between the Salmonella Gallinarum biovar Gallinarum and the Salmonella Gallinarum biovar Pullorum genomes
(Elsevier B.V., 2015-03-01)
Salmonella Gallinarum is the causative agent of fowl typhoid, a severe septicaemic disease that affects birds of all ages, whereas S. Pullorum causes pullorum disease, a systemic disorder affecting primarily young birds. ...
Whole-genome comparative analysis of the pathogen Piscirickettsia salmonis
(Elsevier, 2016)
The intracellular pathogen Piscirickettsia salmonis is the etiological agent of piscirickettsiosis, the most important bacterial disease that affects the Chilean salmon industry. Despite its importance, little is known ...
Genome-wide discovery of pre-miRNAs: comparison of recent approaches based on machine learning (IF 5.610)
(Oxford University Press, 2020-08)
Motivation: The genome-wide discovery of microRNAs (miRNAs) involves identifying sequences having the highest chance of being a novel miRNA precursor (pre-miRNA), within all the possible sequences in a complete genome. The ...
BGGE: a new package for genomic-enabled prediction incorporating genotype × environment interaction models
(Genetics Society of America, 2018)
A comparison of methods to estimate genomic relationships using pedigree and markers in livestock populations
(Wiley Blackwell Publishing, Inc, 2016-12)
Accurate prediction of breeding values depends on capturing the variability in genome sharing of relatives with the same pedigree relationship. Here, we compare two approaches to set up genomic relationship matrices for ...
The smallest known genomes of multicellular and toxic cyanobacteria: comparison, minimal gene sets for linked traits and the evolutionary implications
(PUBLIC LIBRARY SCIENCE, 2010)
Cyanobacterial morphology is diverse, ranging from unicellular spheres or rods to multicellular structures such as colonies and filaments. Multicellular species represent an evolutionary strategy to differentiate and ...
Construction of reference chromosome-scale pseudomolecules for potato: Integrating the potato genome with genetic and physical maps
(Genetics Society of America, 2013)
The genome of potato, a major global food crop, was recently sequenced. The work presented here details the integration of the potato reference genome (DM) with a new sequence-tagged site marker−based linkage map and other ...