Genome wide association study of karnal bunt resistance in a wheat germplasm collection from Afghanistan

dc.creatorGupta, V.
dc.creatorXinyao He
dc.creatorKumar, N.
dc.creatorFuentes Dávila, G.
dc.creatorSharma, R.K.
dc.creatorDreisigacker, S.
dc.creatorJuliana, P.
dc.creatorAtaei, N.
dc.creatorSingh, P.K.
dc.date2019-09-19T19:26:59Z
dc.date2019-09-19T19:26:59Z
dc.date2019
dc.date.accessioned2023-07-17T20:04:23Z
dc.date.available2023-07-17T20:04:23Z
dc.identifier1422-0067
dc.identifierhttps://hdl.handle.net/10883/20243
dc.identifier10.3390/ijms20133124
dc.identifier.urihttps://repositorioslatinoamericanos.uchile.cl/handle/2250/7512060
dc.descriptionKarnal bunt disease of wheat, caused by the fungus Neovossia indica, is one of the most important challenges to the grain industry as it affects the grain quality and also restricts the international movement of infected grain. It is a seed-, soil- and airborne disease with limited effect of chemical control. Currently, this disease is contained through the deployment of host resistance but further improvement is limited as only a few genotypes have been found to carry partial resistance. To identify genomic regions responsible for resistance in a set of 339 wheat accessions, genome-wide association study (GWAS) was undertaken using the DArTSeq® technology, in which 18 genomic regions for Karnal bunt resistance were identified, explaining 5–20% of the phenotypic variation. The identified quantitative trait loci (QTL) on chromosome 2BL showed consistently significant effects across all four experiments, whereas another QTL on 5BL was significant in three experiments. Additional QTLs were mapped on chromosomes 1DL, 2DL, 4AL, 5AS, 6BL, 6BS, 7BS and 7DL that have not been mapped previously, and on chromosomes 4B, 5AL, 5BL and 6BS, which have been reported in previous studies. Germplasm with less than 1% Karnal bunt infection have been identified and can be used for resistance breeding. The SNP markers linked to the genomic regions conferring resistance to Karnal bunt could be used to improve Karnal bunt resistance through marker-assisted selection.
dc.formatPDF
dc.languageEnglish
dc.publisherMDPI
dc.relationhttps://www.mdpi.com/1422-0067/20/13/3124/s1
dc.rightsCIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose.
dc.rightsOpen Access
dc.sourceart. 3124
dc.source20
dc.sourceInternational Journal of Molecular Sciences
dc.subjectAGRICULTURAL SCIENCES AND BIOTECHNOLOGY
dc.subjectNeovossia indica
dc.subjectSNP's
dc.subjectKARNAL BUNT
dc.subjectTILLETIA INDICA
dc.subjectDISEASE RESISTANCE
dc.subjectPLANT BREEDING
dc.subjectTRITICUM AESTIVUM
dc.subjectGERMPLASM
dc.titleGenome wide association study of karnal bunt resistance in a wheat germplasm collection from Afghanistan
dc.typeArticle
dc.typePublished Version
dc.coverageAFGHANISTAN
dc.coverageBasel (Switzerland)


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