Computational Analysis of Transposable Elements and CircRNAs in Plants

dc.contributorFederal University of Technology—Paraná (UTFPR)
dc.contributorEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
dc.contributorUniversidade Estadual Paulista (UNESP)
dc.contributorUniversidad de Chile
dc.contributorUniversidade de São Paulo (USP)
dc.date.accessioned2022-04-28T19:41:25Z
dc.date.accessioned2022-12-20T01:17:55Z
dc.date.available2022-04-28T19:41:25Z
dc.date.available2022-12-20T01:17:55Z
dc.date.created2022-04-28T19:41:25Z
dc.date.issued2021-01-01
dc.identifierMethods in Molecular Biology, v. 2362, p. 147-172.
dc.identifier1940-6029
dc.identifier1064-3745
dc.identifierhttp://hdl.handle.net/11449/221925
dc.identifier10.1007/978-1-0716-1645-1_9
dc.identifier2-s2.0-85109502015
dc.identifier.urihttps://repositorioslatinoamericanos.uchile.cl/handle/2250/5402055
dc.description.abstractThis chapter provides two main contributions: (1) a description of computational tools and databases used to identify and analyze transposable elements (TEs) and circRNAs in plants; and (2) data analysis on public TE and circRNA data. Our goal is to highlight the primary information available in the literature on circular noncoding RNAs and transposable elements in plants. The exploratory analysis performed on publicly available circRNA and TEs data help discuss four sequence features. Finally, we investigate the association on circRNAs:TE in plants in the model organism Arabidopsis thaliana.
dc.languageeng
dc.relationMethods in Molecular Biology
dc.sourceScopus
dc.subjectBioinformatics
dc.subjectCircRNAs
dc.subjectCircular RNA
dc.subjectComputational methods
dc.subjectData analysis
dc.subjectDatabases
dc.subjectInteraction
dc.subjectMobile elements
dc.subjectNoncoding
dc.subjectTransposable elements
dc.titleComputational Analysis of Transposable Elements and CircRNAs in Plants
dc.typeCapítulos de libros


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