info:eu-repo/semantics/article
Topology to geometry in protein folding: β-Lactoglobulin
Registro en:
Fernandez, Ariel; Colubri, Andrés; Berry, Stephen R.; Topology to geometry in protein folding: β-Lactoglobulin; National Academy of Sciences; Proceedings of the National Academy of Sciences of The United States of America; 97; 26; 19-12-2000; 14062-14066
0027-8424
1091-6490
CONICET Digital
CONICET
Autor
Fernandez, Ariel
Colubri, Andrés
Berry, Stephen R.
Resumen
Evolution of protein structure from random coil to native is first represented topologically by its time-dependent sequences of discretized Ramachandran basins occupied by successive backbone residues. Introducing energetic and entropic criteria at each instant of observation transforms the description from a structurally ambiguous topological representation to an unambiguous geometric picture of the folding process. The method is applied with success to folding of β-lactoglobulin, traditionally perplexing because of its reputed nonhierarchical folding pattern. This molecule passes through a stage, ca. 0.1 μs duration, of transient, "flickering" α-helical structure, until a bit of tertiary structure forms that stabilizes the system long enough to allow it to pass to its native β-sheet. Fil: Fernandez, Ariel. University of California; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Matemática Bahía Blanca. Universidad Nacional del Sur. Departamento de Matemática. Instituto de Matemática Bahía Blanca; Argentina Fil: Colubri, Andrés. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Matemática Bahía Blanca. Universidad Nacional del Sur. Departamento de Matemática. Instituto de Matemática Bahía Blanca; Argentina Fil: Berry, Stephen R.. University of Chicago; Estados Unidos