doctoralThesis
Aspectos funcionais de peptídeos vegetais com efeito anti-inflamatório na obesidade e avaliação estrutural do inibidor de tripsina kunitz de sementes de tamarindo
Fecha
2021-10-25Registro en:
MEDEIROS, Amanda Fernandes de. Aspectos funcionais de peptídeos vegetais com efeito anti-inflamatório na obesidade e avaliação estrutural do inibidor de tripsina kunitz de sementes de tamarindo. 2021. 84f. Tese (Doutorado em Bioquímica e Biologia Molecular) - Centro de Biociências, Universidade Federal do Rio Grande do Norte, Natal, 2021.
Autor
Medeiros, Amanda Fernandes de
Resumen
Subclinical inflammation in overweight and obesity alters several metabolic pathways,
with positive reinforcement for accumulating more adipose tissue and alteration in energy
metabolism. Several studies have evaluated the anti-inflammatory and
immunomodulatory effects of hydrolyzed proteins and plant peptides, but it is necessary
to explore the mechanisms of action of these effects. Thus, in the first chapter of this
thesis, the narrative review presented the understanding of the mechanisms of action of
hydrolyzed proteins and plant peptides on inflammation affected by excess adipose tissue.
For this, a search was performed in the databases, selecting studies involving target
metabolic pathways and responses of hydrolyzed proteins or peptides of plant origin. The
mechanisms observed permeate the inhibition of the NF-kB pathway, reduction of
oxidative stress, stimulation of the PI3K-AKT pathway and enzymes related to
detoxification (superoxide dismutase and catalase), thus culminating in the reduction of
inflammatory cytokines and adipokines, as well as the polarization of macrophages to the
M2 phenotype. In the second chapter, the study in vitro and computer simulation
(in silico) with the purified trypsin inhibitor of tamarind seeds (Tamarindus indica L.)
(TTIp) is shown. This protein has been studied in vitro and in preclinical studies to treat
obesity, its complications, and associated comorbidities. The TTIp was sequenced de
novo by MALDI-TOF/TOF. Its modeling was obtained by homology, and the interaction
with the trypsin enzyme (PDB ID 2PTN) was evaluated through molecular dynamics
simulation (DM) under controlled conditions of temperature, pressure, and presence of
water. 75 additional amino acid residues from the TTIp sequence were identified. The
modeling by homology was performed by CONCOORD and validated by MolProbity,
and the four best conformations of the modeling were submitted to DM. Conformation
no. 287 of model no. 56 was selected, considering the RMSD analysis and the interaction
energy (-301.0128 kcal.mol-1). Ile (54), Pro (57), Arg (59), Arg (63) and Glu (78)
residues of ITTp showed lower interaction energy and, therefore, more significant
interaction with the trypsin enzyme (PDB ID 2PTN). Among these, Arg residues (59 and
63) were mainly involved in its electrostatic binding mechanism. These results favor
continuity of studies with the TTIp for applications in preclinical and clinical studies in
the health area, contributing to the control of severe public health diseases, such as
obesity. Finally, considering the potential therapeutic molecular targets in the
inflammatory metabolic pathways for plant peptides in the treatment of obesity, revealed
through the narrative review, sequencing, modeling and molecular dynamics of TTIp with
trypsin, through studies in silico, this thesis deepens knowledge about TTIp and generates
support for future studies.