| dc.relation | /*ref*/Adams IP, Glover RH, Monger WA, Mumford R, Jackeviciene E, Navalinskiene M, Samuitiene M, Boonham N. 2009. Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology. Molecular Plant Pathology, 10:537-545. 2. Al Rwahnih M, Daubert S, Golino D, Rowhani A. 2009. Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus. Virology, 387:395-401. 3. Al Rwahnih M, Daubert S, Urbez-Torres JR, Cordero F, Rowhani A. 2011. Deep sequencing evidence from single grapevine plants reveals a virome dominated by mycoviruses. Archives of Virology, 156:397-403. 4. Ali M, Maoka T, Natsuaki KT. 2008. The Occurrence of potato viruses in Syria and the molecular detection and characterization of Syrian Potato virus S isolates. Potato Research, 51:151-161. 5. Chomczynski P, Sacchi N. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Analytical Biochemistry, 162: 156-159. 6. Coetzee B, Freeborough MJ, Maree HJ, Celton JM, Rees DJ, Burger JT. 2010. Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard. Virology, 400:157-163. 7. Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M. 2005. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics, 21:3674-3676. 8. Cox BA, Jones RA. 2010. Genetic variability in the coat protein gene of Potato virus S isolates and distinguishing its biologically distinct strains. Archives of Virology, 155:1163-1169. 9. Duarte P, Ferreira S, Rodrigues S, dos Reis A. 2012. Complete genome sequence of the first Andean strain of Potato virus S from Brazil and evidence of recombination between PVS strains. Archives of Virology, 157:1357-1364. 10. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39:783-791. 11. Fletcher JD. 1996. Potato virus SA – Characteristics of an isolate from New Zealand. New Zealand Journal of Crop and Horticultural Science, 24:335-339. 12. Franco-Lara L, Soto Argel CA , Guzmán Barney M. 2009. Detección de los Virus PVX, PVS, PVY y PLRV en la Colección Central Colombiana de Papa por Medio de la Técnica de Inmunoimpresión (IMI). Revista Facultad de Ciencias Básicas, 5(1-2): 130-139. 13. Franc GD, Banttari EE. 1996. Translocation and mechanical spread of a Minnesota isolate of Potato virus S in potatoes. American Potato Journal 73:123-133. 14. Gil, J.F., J.M. Cotes & M. Marín. 2012. Detección serológica y caracterización molecular de Potato virus S (PVS, Carlavirus) en cultivos de papa de Colombia. Revista Biología Tropical (En prensa). 15. Huang, X, Madan, A. 1999. CAP3: A DNA sequence assembly program. Genome Research, 9:868-877. 16. Jeffries CJ. 1998. Potato FAO/IPGRI Technical guidelines for the safe movement of germplasm No 19. FAO/IPGRI, Roma, Italia. 17. Jones RAC. 1981. The ecology of viruses infecting wild and cultivated potatoes in the Andean Region of South America. P. 89-107. En: Thresh JM (ed). Pests, pathogens and vegetation. Pitman, London. 18. Kreuze JF, Perez A, Untiveros M, Quispe D, Fuentes S, Barker I, Simon R. 2009. Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses. Virology, 388:1-7. 19. Kobayashi K, Atsumi G, Yamaoka N, Sekine K. 2012. Review: Sequencing-based virus hunting and virus detection. Japan Agricultural Research Quarterly, 46:123-128. 20. Lambert SJ, Scott J, Pethybridge S, Hay FS. 2012. Strain characterization of Potato virus S Isolates from Tasmania, Australia. Plant Disease 96:813-819. 21. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H. 2007. Clustal W and Clustal X version 2.0. Bioinformatics, 23: 2947-2948. 22. Lin Y, Druffel K, Whitworth J, Pavek M, Pappu H. 2009. Molecular characterization of two Potato virus S isolates from late-blight-resistant genotypes of potato (Solanum tuberosum). Archives of Virology, 154:1861-1863. 23. Mackenzie DJ, Tremaine JH, Stace-Smith R. 1989. Organization and internal homologies of the 3'-terminal portion of Potato virus S RNA. Journal of General Virology, 70:1053-1063. 24. Martin DP, Posada D, Crandall KA, Williamson C. 2005. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Research and Human Retroviruses, 21: 98-102. 25. Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P. 2010. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics, 26:2462-2463. 26. Matoušek J, Schubert J, Dedic P, Ptácek J. 2000. A broad variability of Potato virus S (PVS) revealed by analysis of virus sequences amplified by reverse transcriptase-polymerase chain reaction. Canadian Journal of Plant Pathology 22:29-37. 27. Matoušek J, Schubert J, Ptácek J, Kozlová P, Dedic P. 2005. Complete nucleotide sequence and molecular probing of Potato virus S genome. Acta Virologica, 49:195-205. 28. Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D. 2010. Tablet - next generation sequence assembly visualization. Bioinformatics, 26:401-402. 29. Nie X, Singh RP. 2001. A novel usage of random primers for multiplex RT-PCR detection of virus and viroid in aphids, leaves and tubers. Journal of Virological Methods, 91:37-49. 30. Nyalugwe EP, Wilson CR, Coutts BA, Jones RAC. 2012. Biological properties of Potato virus X in potato: Effects of mixed infection with Potato virus S and resistance phenotypes in cultivars from three continents. Plant Disease, 96:43-54. 31. Ramírez Franco L.A.; González Jaimes E.P.; Cotes Torres J.M. 2011. Comparación de la Propagación por Esquejes y Minitubérculos de Genotipos de Solanum phureja Juz et Buk. Revista Facultad de Ciencias Básicas, 7:50-57 32. Restrepo J.A.; Zuluaga Amaya C.; Cotes Torres J.M.; González Jaimes E.P. 2011. Infección de Spongospora subterranea en Esquejes de Papa (Solanum tuberosum) Var. Diacol Capiro Proveniente de Tres Fuentes de Inóculo. Revista Facultad de Ciencias Básicas, 7:58-71. 33. Ramírez Franco L.A.; Zuluaga Amaya C.M.; Cotes Torres J.M. 2011. Sobrevivencia de Esquejes de Tallo Lateral de Genotipos de Solanum phureja. Revista Facultad de Ciencias Básicas, 7:182-191 34. Ramírez Franco L.A.; Zuluaga Amaya C.M.; Cotes Torres J.M. 2011. Evaluación de Metodologías de Enraizamiento de Esquejes de Tallo Lateral en Genotipos de Solanum phureja. Revista Facultad de Ciencias Básicas, 7:192-203 35. Salazar LF. 1996. Potato viruses and their control. International Potato Center, Lima, Perú, 214 p. 36. Salari K, Massumi H, Heydarnejad J, Hosseini A, Varsani A. 2011. Analysis of Iranian Potato virus S isolates. Virus Genes, 43:281-288. 37. Stevenson WR, Loria R, Franc GD, Weingartner DP. 2001. Compendium of potato diseases. APS Press, St. Paul, EEUU, 106 p. 38. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution, 28:2731-2739. 39. Wardrop EA, Gray AB, Singh RP, Peterson JF. 1989. Aphid transmission of Potato virus S. American Potato Journal, 66:449-459. | |
