Artículos de revistas
Burrows-wheeler Transform And Lcp Array Construction In Constant Space
Registro en:
Journal Of Discrete Algorithms. Elsevier Science Bv, v. 42, p. 14 - 22, 2017.
1570-8667
1570-8675
WOS:000394809100003
10.1016/j.jda.2016.11.003
Autor
Louza
Felipe A.; Gagie
Travis; Telles
Guilherme P.
Institución
Resumen
Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) In this article we extend the elegant in-place Burrows-Wheeler transform (BWT) algorithm proposed by Crochemore et al. [12]. Our extension is twofold: we first show how to compute simultaneously the longest common prefix (LCP) array as well as the BWT, using constant additional space; we then show how to build the LCP array directly in compressed representation using Elias coding, still using constant additional space and with no asymptotic slowdown. Furthermore, we provide a time/space tradeoff for our algorithm when additional memory is allowed. Our algorithm runs in quadratic time, as does Crochemore et al.'s, and is supported by interesting properties of the BWT and of the LCP array, contributing to our understanding of the time/space tradeoff curve for building indexing structures. (c) 2016 Elsevier B.V. All rights reserved. 42 14 22 CAPES CNPq [162338/2015-5] Academy of Finland Basal Funds [FB0001] CONICYT, Chile CNPq Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)