In Silico Approach For Characterization And Comparison Of Repeats In The Genomes Of Oil And Date Palms

dc.creatorFerreira Filho
dc.creatorJaire Alves; de Brito
dc.creatorLucas Soares; Leao
dc.creatorAndre Pereira; Alves
dc.creatorAlexandre Alonso; Formighieri
dc.creatorEduardo Fernandes; Souza Junior
dc.creatorManoel Teixeira
dc.date2017
dc.date2017-11-13T13:15:25Z
dc.date2017-11-13T13:15:25Z
dc.date.accessioned2018-03-29T05:52:58Z
dc.date.available2018-03-29T05:52:58Z
dc.identifierBioinformatics And Biology Insights. Sage Publications Ltd, v. 11, p. , 2017.
dc.identifier1177-9322
dc.identifierWOS:000400114600001
dc.identifier10.1177/1177932217702388
dc.identifierhttp://insights.sagepub.com.ez88.periodicos.capes.gov.br/in-silico-approach-for-characterization-and-comparison-of-repeats-in-t-article-a6297
dc.identifierhttp://repositorio.unicamp.br/jspui/handle/REPOSIP/327356
dc.identifier.urihttp://repositorioslatinoamericanos.uchile.cl/handle/2250/1364381
dc.descriptionCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)
dc.descriptionTransposable elements (TEs) are mobile genetic elements present in almost all eukaryotic genomes. Due to their typical patterns of repetition, discovery, and characterization, they demand analysis by various bioinformatics software. Probably, as a result of the need for a complex analysis, many genomes publicly available do not have these elements annotated yet. In this study, a de novo and homology-based identification of TEs and microsatellites was performed using genomic data from 3 palm species: Elaeis oleifera (American oil palm, v.1, Embrapa, unpublished; v.8, Malaysian Palm Oil Board [MPOB], public), Elaeis guineensis (African oil palm, v. 5, MPOB, public), and Phoenix dactylifera (date palm). The estimated total coverage of TEs was 50.96% (523 572 kb) and 42.31% (593 463 kb), 39.41% (605 015 kb), and 33.67% (187 361 kb), respectively. A total of 155 726 microsatellite loci were identified in the genomes of oil and date palms. This is the first detailed description of repeats in the genomes of oil and date palms. A relatively high diversity and abundance of TEs were found in the genomes, opening a range of further opportunities for applied research in these genera. The development of molecular markers (mainly simple sequence repeat), which may be immediately applied in breeding programs of those species to support the selection of superior genotypes and to enhance knowledge of the genetic structure of the breeding and natural populations, is the most notable opportunity.
dc.description11
dc.descriptionJAFF by the Coordination for the Improvement of Higher Education Personnel (CAPES)
dc.descriptionFoundation within the Ministry of Education in Brazil via the Graduate Program in Plant Biotechnology, Federal University of Lavras (UFLA)
dc.descriptionCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)
dc.languageEnglish
dc.publisherSAGE Publications Ltd
dc.publisherLondon
dc.relationBioinformatics and Biology Insights
dc.rightsaberto
dc.sourceWOS
dc.subjectElaeis Oleifera
dc.subjectElaeis Guineensis
dc.subjectPhoenix Dactylifera
dc.subjectBioinformatics
dc.subjectTransposable Elements
dc.titleIn Silico Approach For Characterization And Comparison Of Repeats In The Genomes Of Oil And Date Palms
dc.typeArtículos de revistas


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