dc.creator | Moreira L.M. | |
dc.creator | Almeida Jr N.F. | |
dc.creator | Potnis N. | |
dc.creator | Digiampietri L.A. | |
dc.creator | Adi S.S. | |
dc.creator | Bortolossi J.C. | |
dc.creator | da Silva A.C. | |
dc.creator | da Silva A.M. | |
dc.creator | de Moraes F.E. | |
dc.creator | de Oliveira J.C. | |
dc.creator | de Souza R.F. | |
dc.creator | Facincani A.P. | |
dc.creator | Ferraz A.L. | |
dc.creator | Ferro M.I. | |
dc.creator | Furlan L.R. | |
dc.creator | Gimenez D.F. | |
dc.creator | Jones J.B. | |
dc.creator | Kitajima E.W. | |
dc.creator | Laia M.L. | |
dc.creator | Leite Jr R.P. | |
dc.creator | Nishiyama M.Y. | |
dc.creator | Rodrigues Neto J. | |
dc.creator | Nociti L.A. | |
dc.creator | Norman D.J. | |
dc.creator | Ostroski E.H. | |
dc.creator | Pereira Jr H.A. | |
dc.creator | Staskawicz B.J. | |
dc.creator | Tezza R.I. | |
dc.creator | Ferro J.A. | |
dc.creator | Vinatzer B.A. | |
dc.creator | Setubal J.C. | |
dc.date | 2010 | |
dc.date | 2015-06-26T12:37:39Z | |
dc.date | 2015-11-26T15:27:37Z | |
dc.date | 2015-06-26T12:37:39Z | |
dc.date | 2015-11-26T15:27:37Z | |
dc.date.accessioned | 2018-03-28T22:36:18Z | |
dc.date.available | 2018-03-28T22:36:18Z | |
dc.identifier | | |
dc.identifier | Bmc Genomics. , v. 11, n. 1, p. - , 2010. | |
dc.identifier | 14712164 | |
dc.identifier | 10.1186/1471-2164-11-238 | |
dc.identifier | http://www.scopus.com/inward/record.url?eid=2-s2.0-77950660340&partnerID=40&md5=ef9749b068753ecca6b5104ad864ad89 | |
dc.identifier | http://www.repositorio.unicamp.br/handle/REPOSIP/91223 | |
dc.identifier | http://repositorio.unicamp.br/jspui/handle/REPOSIP/91223 | |
dc.identifier | 2-s2.0-77950660340 | |
dc.identifier.uri | http://repositorioslatinoamericanos.uchile.cl/handle/2250/1261391 | |
dc.description | Background: Citrus canker is a disease that has severe economic impact on the citrus industry worldwide. There are three types of canker, called A, B, and C. The three types have different phenotypes and affect different citrus species. The causative agent for type A is Xanthomonas citri subsp. citri, whose genome sequence was made available in 2002. Xanthomonas fuscans subsp. aurantifolii strain B causes canker B and Xanthomonas fuscans subsp. aurantifolii strain C causes canker C.Results: We have sequenced the genomes of strains B and C to draft status. We have compared their genomic content to X. citri subsp. citri and to other Xanthomonas genomes, with special emphasis on type III secreted effector repertoires. In addition to pthA, already known to be present in all three citrus canker strains, two additional effector genes, xopE3 and xopAI, are also present in all three strains and are both located on the same putative genomic island. These two effector genes, along with one other effector-like gene in the same region, are thus good candidates for being pathogenicity factors on citrus. Numerous gene content differences also exist between the three cankers strains, which can be correlated with their different virulence and host range. Particular attention was placed on the analysis of genes involved in biofilm formation and quorum sensing, type IV secretion, flagellum synthesis and motility, lipopolysacharide synthesis, and on the gene xacPNP, which codes for a natriuretic protein.Conclusion: We have uncovered numerous commonalities and differences in gene content between the genomes of the pathogenic agents causing citrus canker A, B, and C and other Xanthomonas genomes. Molecular genetics can now be employed to determine the role of these genes in plant-microbe interactions. The gained knowledge will be instrumental for improving citrus canker control. © 2010 Moreira et al; licensee BioMed Central Ltd. | |
dc.description | 11 | |
dc.description | 1 | |
dc.description | | |
dc.description | | |
dc.description | Timmer, L.W., Garnsey, S.M., Graham, J.H., Compendium of Citrus Diseases (2000), St. Paul, MN: American Phytopathological Society, 2, (eds)Gottwald, T.R., Graham, J.H., Schubert, T.S., Citrus canker: The pathogen and its impact (2002) Plant Health Progress, , http://plantmanagementnetwork.org/pub/php/review/citruscanker | |
dc.description | Brunings, A.M., Gabriel, D.W., Xanthomonas citri: breaking the surface (2003) Molecular Plant Pathology, 4 (3), pp. 141-157 | |
dc.description | Schubert, T.S., Miller, J.W., Bacterial citrus canker (1996) Plant Pathology Circular, 377, pp. 110-111. , Florida Department of Agriculture and Consumer Services DoPI, Gainesville, FL | |
dc.description | Koizumi, M., Citrus canker: the world situation (1985), University of Florida: Lake AlfredGraham, J.H., Gottwald, T.R., Cubero, J., Achor, D.S., Xanthomonas axonopodis pv. citri: factors affecting successful eradication of citrus canker (2004) Molecular Plant Pathology, 5 (1), pp. 1-15 | |
dc.description | Bitancourt, A.A., O Cancro Cítrico (1957) O Biológico, 23, pp. 110-111 | |
dc.description | Civerolo, E.L., Bacterial canker disease of citrus (1984) Journal of the Rio Grande Valley Horticultural Society, 37, pp. 127-145 | |
dc.description | Malavolta Júnior, V.A., Yamashiro, T., Nogueira, E.M.C., Feichtenberger, E., Distribuição do tipo C de Xanthomonas campestris pv. citri no Estado de São Paulo (1984) Summa Phytopathologica, 10, p. 11 | |
dc.description | Egel, D.S., Graham, J.H., Stall, R.E., Genomic Relatedness of Xanthomonas campestris Strains Causing Diseases of Citrus (1991) Applied and Environmental Microbiology, 57 (9), pp. 2724-2730. , 183647, 16348555 | |
dc.description | Gabriel, D., Hunter, G., Kingsley, M., Miller, J., Lazo, G., Clonal Population Structure of Xanthomonas campestris and Genetic Diversity Among Citrus Canker Strains (1988) Molecular Plant-Microbe Interactions, 1 (2), pp. 59-65 | |
dc.description | da Silva, A.C.R., Ferro, J.A., Reinach, F.C., Farah, C.S., Furlan, L.R., Quaggio, R.B., Monteiro-Vitorello, C.B., Gruber, A., Comparison of the genomes of two Xanthomonas pathogens with differing host specificities (2002) Nature, 417 (6887), pp. 459-463. , 10.1038/417459a, 12024217 | |
dc.description | Moreira, L.M., de Souza, R.E., Almeida, N.F., Setubal, J.C., Oliveira, J.C.F., Furlan, L.R., Ferro, J.A., da Silva, A.C.R., Comparative genomics analyses of citrus-associated bacteria (2004) Annual Review of Phytopathology, 42, pp. 163-184. , 10.1146/annurev.phyto.42.040803.140310, 15283664 | |
dc.description | Moreira, L.M., De Souza, R.F., Digiampietri, L.A., Da Silva, A.C.R., Setubal, J.C., Comparative analyses of Xanthomonas and Xylella complete genomes (2005) Omics, 9 (1), pp. 43-76. , 10.1089/omi.2005.9.43, 15805778 | |
dc.description | Swarup, S., Feyter, R.D., Brlansky, R.H., Gabriel, D.W., A pathogenicity locus from Xanthomonas citri enables strains from several pathovars of X. campestris to elicit cankerlike lesions on citrus (1991) Phytopathology, 81, pp. 802-809 | |
dc.description | Duan, Y.P., Castaneda, A.L., Zhao, G., Erdos, G., Gabriel, D.W., Expression of a single, host-specific, bacterial pathogenicity gene in plant cells elicits division, enlargement and cell death (1999) Molecular Plant-Microbe Interactions, 12, pp. 556-560 | |
dc.description | Al-Saadi, A., Reddy, J.D., Duan, Y.P., Brunings, A.M., Yuan, Q.P., Gabriel, D.W., All five host-range variants of Xanthomonas citri carry one pthA homolog with 17.5 repeats that determines pathogenicity on citrus, but none determine host-range variation (2007) Molecular Plant-Microbe Interactions, 20 (8), pp. 934-943. , 10.1094/MPMI-20-8-0934, 17722697 | |
dc.description | Swarup, S., Yang, Y., Kingsley, M.T., Gabriel, D.W., A Xanthomonas citri pathogenicity gene, pthA, pleiotropically encodes gratuitous avirulence on nonhosts (1992) Mol Plant Microbe Interact, 5 (3), pp. 204-213 | |
dc.description | Verniere, C., Hartung, J.S., Pruvost, O.P., Civerolo, E.L., Alvarez, A.M., Maestri, P., Luisetti, J., Characterization of phenotypically distinct strains of Xanthomonas axonopodis pv. citri from Southwest Asia (1998) European Journal of Plant Pathology, 104 (5), pp. 477-487 | |
dc.description | Sun, X.A., Stall, R.E., Jones, J.B., Cubero, J., Gottwald, T.R., Graham, J.H., Dixon, W.N., Sutton, B.D., Detection and characterization of a new strain of citrus canker bacteria from key Mexican lime and Alemow in South Florida (2004) Plant Disease, 88 (11), pp. 1179-1188 | |
dc.description | Rybak, M., Minsavage, G.V., Stall, R.E., Jones, J.B., Identification of Xanthomonas citri ssp citri host specificity genes in a heterologous expression host (2009) Molecular Plant Pathology, 10 (2), pp. 249-262. , 10.1111/j.1364-3703.2008.00528.x, 19236573 | |
dc.description | Ngoc, L.B.T., Verniere, C., Jouen, E., Ah-You, N., Lefeuvre, P., Chiroleu, F., Gagnevin, L., Pruvost, O., Amplified fragment length polymorphism and multilocus sequence analysis-based genotypic relatedness among pathogenic variants of Xanthomonas citri pv. citri and Xanthomonas campestris pv. bilvae (2009) International Journal of Systematic and Evolutionary Microbiology | |
dc.description | Namekata, T., Estudos comparativos entre Xanthomonas citri (Hasse) Dow., agente causal do cancro cítrico e Xanthomonas citri (Hasse) Dow., n.f.sp. aurantifolia, agente causal da cancrose do limoeiro Galego (1971), Piracicaba: University of São PauloJaciani, F.J., Destefano, S.A., Rodrigues Neto, J., Belasque Jr, J., Detection of a New Bacterium Related to Xanthomonas fuscans subsp. aurantifolii Infecting Swingle Citrumelo in Brazil (2009) Plant Disease, 93 (10), p. 1074 | |
dc.description | Humphries, J., Bacteriology (1974), London John MurraySchaad, N.W., Jones, J.B., Lacy, G.H., Gram-negative bacteria: Xanthomonas (2001) Laboratory Guide for Identification of Plant Pathogenic Bacteria, pp. 175-200. , St. Paul: APS Press, Schaad NW, Jones JB, Chun W, 3 | |
dc.description | Rodrigues Neto, J., Malavolta, V.A., Victor, O., Meio simples para isolamento e cultivo de Xanthomonas campestris pv. citri Tipo B [abstract] (1986) Summa Phytopathologica, 12 (1-2), p. 16 | |
dc.description | Cubero, J., Graham, J.H., Genetic relationship among worldwide strains of Xanthomonas causing canker in citrus species and design of new primers for their identification by PCR (2002) Appl Environ Microbiol, 68 (3), pp. 1257-1264. , 10.1128/AEM.68.3.1257-1264.2002, 123760, 11872476 | |
dc.description | Leite, R.P., Egel, D.S., Stall, R.E., Genetic analysis of hrp-related DNA sequences ofXanthomonas campestris strains causing diseases of citrus (1994) Appl Environ Microbiol, 60 (4), pp. 1078-1086. , 201442, 7912499 | |
dc.description | Vauterin, L., Yang, P., Hoste, B., Vancanneyt, M., Civerolo, E.L., Swings, J., Kersters, K., Differentiation of Xanthomonas campestris pv. citri Strains by Sodium Dodecyl Sulfate-Polyacrylamide Gel-Electrophoresis of Proteins, Fatty-Acid Analysis, and DNA-DNA Hybridization (1991) International Journal of Systematic Bacteriology, 41 (4), pp. 535-542 | |
dc.description | Laia, M.L., Moreira, L.M., Dezajacomo, J., Brigati, J.B., Ferreira, C.B., Ferro, M.I., Silva, A.C., Oliveira, J.C., New genes of Xanthomonas citri subsp. citri involved in pathogenesis and adaptation revealed by a transposon-based mutant library (2009) BMC Microbiol, 9, p. 12. , 10.1186/1471-2180-9-12, 2653504, 19149882 | |
dc.description | Schaad, N.W., Postnikova, E., Lacy, G.H., Sechler, A., Agarkova, I., Stromberg, P.E., Stromberg, V.K., Vidaver, A.K., Reclassification of Xanthomonas campestris pv. citri (ex Hasse 1915) Dye 1978 forms A, B/C/D, and E as X. smithii subsp. citri (ex Hasse) sp. nov. nom. rev. comb. nov., X. fuscans subsp. aurantifolii (ex Gabriel 1989) sp. nov. nom. rev. comb. nov., and X. alfalfae subsp. citrumelo (ex Riker and Jones) Gabriel et al., 1989 sp. nov. nom. rev. comb. nov. | |
dc.description | X. campestris pv malvacearum (ex smith 1901) (2005) Syst Appl Microbiol, 28 (6), pp. 494-518. , 10.1016/j.syapm.2005.03.017, 16104350 | |
dc.description | Schaad, N.W., Postnikova, E., Lacy, G., Sechler, A., Agarkova, I., Stromberg, P.E., Stromberg, V.K., Vidaver, A.K., Emended classification of xanthomonad pathogens on citrus (2006) Syst Appl Microbiol, 29 (8), pp. 690-695. , 10.1016/j.syapm.2006.08.001, 17183629 | |
dc.description | Young, J.M., Park, D.C., Shearman, H.M., Fargier, E., A multilocus sequence analysis of the genus Xanthomonas (2008) Syst Appl Microbiol, 31 (5), pp. 366-377. , 10.1016/j.syapm.2008.06.004, 18783906 | |
dc.description | Almeida, N.F., Yan, S., Cai, R., Clarke, C.R., Morris, C.E., Schaad, N.W., Lacy, G.H., Vinatzer, B.A., PAMDB, A Multilocus Sequence Typing & Analysis Database and Website for Plant-Associated and Plant-Pathogenic Microorganisms (2010) Phytopathology, 100 (3), pp. 208-215. , 10.1094/PHYTO-100-3-0208, 20128693 | |
dc.description | Usher, K.C., Ozkan, E., Gardner, K.H., Deisenhofer, J., The plug domain of FepA, a TonB-dependent transport protein from Escherichia coli, binds its siderophore in the absence of the transmembrane barrel domain (2001) Proc Natl Acad Sci USA, 98 (19), pp. 10676-10681. , 10.1073/pnas.181353398, 58525, 11526207 | |
dc.description | Uria-Nickelsen, M.R., Leadbetter, E.R., Godchaux, W., Comparative aspects of utilization of sulfonate and other sulfur sources by Escherichia coli K12 (1994) Arch Microbiol, 161 (5), pp. 434-438. , 10.1007/BF00288955, 8042907 | |
dc.description | Kim, K.D., Ahn, J.H., Kim, T., Park, S.C., Seong, C.N., Song, H.G., Ka, J.O., Genetic and phenotypic diversity of fenitrothion-degrading bacteria isolated from soils (2009) J Microbiol Biotechnol, 19 (2), pp. 113-120. , 10.4014/jmb.0808.467, 19307758 | |
dc.description | Yang, J., Yang, C., Jiang, H., Qiao, C., Overexpression of methyl parathion hydrolase and its application in detoxification of organophosphates (2008) Biodegradation, 19 (6), pp. 831-839. , 10.1007/s10532-008-9186-2, 18373236 | |
dc.description | Vernikos, G.S., Parkhill, J., Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands (2006) Bioinformatics, 22 (18), pp. 2196-2203. , 10.1093/bioinformatics/btl369, 16837528 | |
dc.description | Alfano, J.R., Collmer, A., Type III secretion system effector proteins: double agents in bacterial disease and plant defense (2004) Annu Rev Phytopathol, 42, pp. 385-414. , 10.1146/annurev.phyto.42.040103.110731, 15283671 | |
dc.description | Hajri, A., Brin, C., Hunault, G., Lardeux, F., Lemaire, C., Manceau, C., Boureau, T., Poussier, S., A "repertoire for repertoire" hypothesis: repertoires of type three effectors are candidate determinants of host specificity inXanthomonas (2009) PLoS One, 4 (8), pp. e6632. , 10.1371/journal.pone.0006632, 2722093, 19680562 | |
dc.description | Heuer, H., Yin, Y.N., Xue, Q.Y., Smalla, K., Guo, J.H., Repeat domain diversity of avrBs3-like genes in Ralstonia solanacearum strains and association with host preferences in the field (2007) Appl Environ Microbiol, 73 (13), pp. 4379-4384. , 10.1128/AEM.00367-07, 1932761, 17468277 | |
dc.description | El Yacoubi, B., Brunings, A.M., Yuan, Q., Shankar, S., Gabriel, D.W., In planta horizontal transfer of a major pathogenicity effector gene (2007) Applied and Environmental Microbiology, 73 (5), pp. 1612-1621. , 10.1128/AEM.00261-06, 1828793, 17220258 | |
dc.description | Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs (1997) Nucleic Acids Research, 25 (17), pp. 3389-3402. , 10.1093/nar/25.17.3389, 146917, 9254694 | |
dc.description | Nimchuk, Z.L., Fisher, E.J., Desveaux, D., Chang, J.H., Dangl, J.L., The HopX (AvrPphE) family of Pseudomonas syringae type III effectors require a catalytic triad and a novel N-terminal domain for function (2007) Mol Plant Microbe Interact, 20 (4), pp. 346-357. , 10.1094/MPMI-20-4-0346, 17427805 | |
dc.description | Schechter, L.M., Roberts, K.A., Jamir, Y., Alfano, J.R., Collmer, A., Pseudomonas syringae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter (2004) J Bacteriol, 186 (2), pp. 543-555. , 10.1128/JB.186.2.543-555.2004, 305754, 14702323 | |
dc.description | Stevens, C., Bennett, M.A., Athanassopoulos, E., Tsiamis, G., Taylor, J.D., Mansfield, J.W., Sequence variations in alleles of the avirulence gene avrPphE. R2 from Pseudomonas syringae pv. phaseolicola lead to loss of recognition of the AvrPphE protein within bean cells and a gain in cultivar-specific virulence (1998) Mol Microbiol, 29 (1), pp. 165-177. , 10.1046/j.1365-2958.1998.00918.x, 9701811 | |
dc.description | Stavrinides, J., Ma, W., Guttman, D.S., Terminal reassortment drives the quantum evolution of type III effectors in bacterial pathogens (2006) PLoS Pathog, 2 (10), pp. e104. , 10.1371/journal.ppat.0020104, 1599762,1599762, 17040127 | |
dc.description | Oh, H.S., Kvitko, B.H., Morello, J.E., Collmer, A., Pseudomonas syringae lytic transglycosylases coregulated with the type III secretion system contribute to the translocation of effector proteins into plant cells (2007) J Bacteriol, 189 (22), pp. 8277-8289. , 10.1128/JB.00998-07, 2168667, 17827286 | |
dc.description | Kim, J.G., Li, X.Y., Roden, J.A., Taylor, K.W., Aakre, C.D., Su, B., Lalonde, S., Mudgett, M.B., Xanthomonas T3S Effector XopN Suppresses PAMP-Triggered Immunity and Interacts with a Tomato Atypical Receptor-Like Kinase and TFT1 (2009) Plant Cell, 21 (4), pp. 1305-1323. , 10.1105/tpc.108.063123, 2685636, 19366901 | |
dc.description | Noel, L., Thieme, F., Nennstiel, D., Bonas, U., Two novel type III-secreted proteins of Xanthomonas campestris pv. vesicatoria are encoded within the hrp pathogenicity island (2002) J Bacteriol, 184 (5), pp. 1340-1348. , 10.1128/JB.184.5.1340-1348.2002, 134860, 11844763 | |
dc.description | Sugio, A., Yang, B., White, F.F., Characterization of the hrpF pathogenicity peninsula of Xanthomonas oryzae pv. oryzae (2005) Mol Plant Microbe Interact, 18 (6), pp. 546-554. , 10.1094/MPMI-18-0546, 15986924 | |
dc.description | Liakopoulou-Kyriakides, M., Psomas, S.K., Kyriakidis, D.A., Xanthan gum production by Xanthomonas campestris w.t. fermentation from chestnut extract (1999) Applied Biochemistry and Biotechnology, 82 (3), pp. 175-183. , 10.1385/ABAB:82:3:175, 15304770 | |
dc.description | Katzen, F., Ferreiro, D.U., Oddo, C.G., Ielmini, M.V., Becker, A., Puhler, A., Ielpi, L., Xanthomonas campestris pv. campestris gum mutants: Effects on xanthan biosynthesis and plant virulence (1998) Journal of Bacteriology, 180 (7), pp. 1607-1617. , 107069, 9537354 | |
dc.description | Boher, B., Nicole, M., Potin, M., Geiger, J.P., Extracellular polysaccharides from Xanthomonas axonopodis pv. manihotis interact with cassava cell walls during pathogenesis (1997) Molecular Plant-Microbe Interactions, 10 (7), pp. 803-811. , 10.1094/MPMI.1997.10.7.803, 9304855 | |
dc.description | Vojnov, A.A., Slater, H., Daniels, M.J., Dow, J.M., Expression of the gum operon directing xanthan biosynthesis in Xanthomonas campestris and its regulation in planta (2001) Molecular Plant-Microbe Interactions, 14 (6), pp. 768-774. , 10.1094/MPMI.2001.14.6.768, 11386372 | |
dc.description | Tang, J.L., Liu, Y.N., Barber, C.E., Dow, J.M., Wootton, J.C., Daniels, M.J., Genetic and Molecular Analysis of a Cluster of Rpf Genes Involved in Positive Regulation of Synthesis of Extracellular Enzymes and Polysaccharide in Xanthomonas campestris pathovar campestris (1991) Molecular & General Genetics, 226 (3), pp. 409-417 | |
dc.description | Newman, K.L., Almeida, R.P., Purcell, A.H., Lindow, S.E., Cell-cell signaling controls Xylella fastidiosa interactions with both insects and plants (2004) Proc Natl Acad Sci USA, 101 (6), pp. 1737-1742. , 10.1073/pnas.0308399100, 341844, 14755059 | |
dc.description | He, Y.W., Zhang, L.H., Quorum sensing and virulence regulation in Xanthomonas campestris (2008) FEMS Microbiol Rev, 32 (5), pp. 842-857. , 10.1111/j.1574-6976.2008.00120.x, 18557946 | |
dc.description | Andre, A., Maucourt, M., Moing, A., Rolin, D., Renaudin, J., Sugar import and phytopathogenicity of Spiroplasma citri: Glucose and fructose play distinct roles (2005) Molecular Plant-Microbe Interactions, 18 (1), pp. 33-42. , 10.1094/MPMI-18-0033, 15672816 | |
dc.description | Gaurivaud, P., Danet, J.L., Laigret, F., Garnier, M., Bove, J.M., Fructose utilization and phytopathogenicity of Spiroplasma citri (2000) Molecular Plant-Microbe Interactions, 13 (10), pp. 1145-1155. , 10.1094/MPMI.2000.13.10.1145, 11043476 | |
dc.description | Gaurivaud, P., Laigret, F., Garnier, M., Bove, J.M., Fructose utilization and pathogenicity of Spiroplasma citri: characterization of the fructose operon (2000) Gene, 252 (1-2), pp. 61-69. , 10.1016/S0378-1119(00)00230-4, 10903438 | |
dc.description | Gaurivaud, P., Laigret, F., Verdin, E., Garnier, M., Bove, J.M., Fructose operon mutants of Spiroplasma citri (2000) Microbiology-Sgm, 146, pp. 2229-2236 | |
dc.description | Dow, J.M., Feng, J.X., Barber, C.E., Tang, J.L., Daniels, M.J., Novel genes involved in the regulation of pathogenicity factor production within the rpf gene cluster of Xanthomonas campestris (2000) Microbiology-Uk, 146, pp. 885-891 | |
dc.description | Tang, J.L., Gough, C.L., Daniels, M.J., Cloning of Genes Involved in Negative Regulation of Production of Extracellular Enzymes and Polysaccharide of Xanthomonas campestris pathovar campestris (1990) Molecular & General Genetics, 222 (1), pp. 157-160 | |
dc.description | Lemos, E.G.D., Alves, L.M.C., Campanharo, J.C., Genomics-based design of defined growth media for the plant pathogen Xylella fastidiosa (2003) Fems Microbiology Letters, 219 (1), pp. 39-45. , 10.1016/S0378-1097(02)01189-8, 12594021 | |
dc.description | da Silva, F.R., Vettore, A.L., Kemper, E.L., Leite, A., Arruda, P., Fastidian gum: the Xylella fastidiosa exopolysaccharide possibly involved in bacterial pathogenicity (2001) Fems Microbiology Letters, 203 (2), pp. 165-171. , 10.1016/S0378-1097(01)00348-2, 11583843 | |
dc.description | Gottig, N., Garavaglia, B.S., Garofalo, C.G., Orellano, E.G., Ottado, J., A Filamentous Hemagglutinin-Like Protein of Xanthomonas axonopodis pv. citri, the Phytopathogen Responsible for Citrus Canker, Is Involved in Bacterial Virulence (2009) PLoS ONE, 4 (2), pp. e4358. , 10.1371/journal.pone.0004358, 2632755, 19194503 | |
dc.description | Pendrak, M.L., Perry, R.D., Characterization of a hemin-storage locus of Yersinia pestis (1991) Biol Met, 4 (1), pp. 41-47. , 10.1007/BF01135556, 1649616 | |
dc.description | Hinnebusch, B.J., Perry, R.D., Schwan, T.G., Role of the Yersinia pestis hemin storage (hms) locus in the transmission of plague by fleas (1996) Science, 273 (5273), pp. 367-370. , 10.1126/science.273.5273.367, 8662526 | |
dc.description | Lillard, J.W., Bearden, S.W., Fetherston, J.D., Perry, R.D., The haemin storage (Hms+) phenotype of Yersinia pestis is not essential for the pathogenesis of bubonic plague in mammals (1999) Microbiology, 145 (1), pp. 197-209. , 10.1099/13500872-145-1-197, 10206699 | |
dc.description | Jarrett, C.O., Deak, E., Isherwood, K.E., Oyston, P.C., Fischer, E.R., Whitney, A.R., Kobayashi, S.D., Hinnebusch, B.J., Transmission of Yersinia pestis from an infectious biofilm in the flea vector (2004) Journal of Infectious Diseases, 190 (4), pp. 783-792. , 10.1086/422695, 15272407 | |
dc.description | Guilhabert, M.R., Kirkpatrick, B.C., Identification of Xylella fastidiosa antivirulence genes: hemagglutinin adhesins contribute a biofilm maturation to X. fastidiosa and colonization and attenuate virulence (2005) Mol Plant Microbe Interact, 18 (8), pp. 856-868. , 10.1094/MPMI-18-0856, 16134898 | |
dc.description | Soto, S.M., Smithson, A., Martinez, J.A., Horcajada, J.P., Mensa, J., Vila, J., Biofilm formation in uropathogenic Escherichia coli strains: Relationship with prostatitis, urovirulence factors and antimicrobial resistance (2007) Journal of Urology, 177 (1), pp. 365-368. , 10.1016/j.juro.2006.08.081, 17162092 | |
dc.description | Arthur, M., Johnson, C.E., Rubin, R.H., Arbeit, R.D., Campanelli, C., Kim, C., Steinbach, S., Goldstein, R., Molecular Epidemiology of Adhesin and Hemolysin Virulence Factors among Uropathogenic Escherichia coli (1989) Infection and Immunity, 57 (2), pp. 303-313. , 313098, 2563254 | |
dc.description | Alegria, M.C., Souza, D.P., Andrade, M.O., Docena, C., Khater, L., Ramos, C.H., da Silva, A.C., Farah, C.S., Identification of new protein-protein interactions involving the products of the chromosome- and plasmid-encoded type IV secretion loci of the phytopathogen Xanthomonas axonopodis pv. citri (2005) J Bacteriol, 187 (7), pp. 2315-2325. , 10.1128/JB.187.7.2315-2325.2005, 1065226, 15774874 | |
dc.description | Barrios, A.F., Zuo, R., Ren, D., Wood, T.K., Hha, YbaJ, and OmpA regulate Escherichia coli K12 biofilm formation and conjugation plasmids abolish motility (2006) Biotechnol Bioeng, 93 (1), pp. 188-200. , 10.1002/bit.20681, 16317765 | |
dc.description | Das, A., Rangaraj, N., Sonti, R.V., Multiple adhesin-like functions of Xanthomonas oryzae pv. oryzae are involved in promoting leaf attachment, entry, and virulence on rice (2009) Mol Plant Microbe Interact, 22 (1), pp. 73-85. , 10.1094/MPMI-22-1-0073, 19061404 | |
dc.description | Darsonval, A., Darrasse, A., Durand, K., Bureau, C., Cesbron, S., Jacques, M.A., Adhesion and fitness in the bean phyllosphere and transmission to seed of Xanthomonas fuscans subsp. fuscans (2009) Mol Plant Microbe Interact, 22 (6), pp. 747-757. , 10.1094/MPMI-22-6-0747, 19445599 | |
dc.description | Craig, L., Li, J., Type IV pili: paradoxes in form and function (2008) Curr Opin Struct Biol, 18 (2), pp. 267-277. , 2442734, 18249533 | |
dc.description | Meng, Y., Li, Y., Galvani, C.D., Hao, G., Turner, J.N., Burr, T.J., Hoch, H.C., Upstream migration of Xylella fastidiosa via pilus-driven twitching motility (2005) J Bacteriol, 187 (16), pp. 5560-5567. , 10.1128/JB.187.16.5560-5567.2005, 1196070, 16077100 | |
dc.description | De La Fuente, L., Montanes, E., Meng, Y., Li, Y., Burr, T.J., Hoch, H.C., Wu, M., Assessing adhesion forces of type I and type IV pili of Xylella fastidiosa bacteria by use of a microfluidic flow chamber (2007) Appl Environ Microbiol, 73 (8), pp. 2690-2696. , 10.1128/AEM.02649-06, 1855618, 17293518 | |
dc.description | Li, Y., Hao, G., Galvani, C.D., Meng, Y., De La Fuente, L., Hoch, H.C., Burr, T.J., Type I and type IV pili of Xylella fastidiosa affect twitching motility, biofilm formation and cell-cell aggregation (2007) Microbiology, 153 (PART 3), pp. 719-726. , 10.1099/mic.0.2006/002311-0, 17322192 | |
dc.description | De La Fuente, L., Burr, T.J., Hoch, H.C., Mutations in type I and type IV pilus biosynthetic genes affect twitching motility rates in Xylella fastidiosa (2007) J Bacteriol, 189 (20), pp. 7507-7510. , 10.1128/JB.00934-07, 2168456, 17693510 | |
dc.description | De La Fuente, L., Burr, T.J., Hoch, H.C., Autoaggregation of Xylella fastidiosa cells is influenced by type I and type IV pili (2008) Appl Environ Microbiol, 74 (17), pp. 5579-5582. , 10.1128/AEM.00995-08, 2546647, 18641157 | |
dc.description | Sidhu, V.K., Vorholter, F.J., Niehaus, K., Watt, S.A., Analysis of outer membrane vesicle associated proteins isolated from the plant pathogenic bacterium Xanthomonas campestris pv. campestris (2008) BMC Microbiol, 8, p. 87. , 10.1186/1471-2180-8-87, 2438364, 18518965 | |
dc.description | Qian, W., Jia, Y., Ren, S.X., He, Y.Q., Feng, J.X., Lu, L.F., Sun, Q., He, C., Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris (2005) Genome Res, 15 (6), pp. 757-767. , 10.1101/gr.3378705, 1142466, 15899963 | |
dc.description | Cascales, E., Christie, P.J., The versatile bacterial type IV secretion systems (2003) Nature Reviews Microbiology, 1 (2), pp. 137-149. , 10.1038/nrmicro753, 15035043 | |
dc.description | Backert, S., Meyer, T.F., Type IV secretion systems and their effectors in bacterial pathogenesis (2006) Current Opinion in Microbiology, 9 (2), pp. 207-217. , 10.1016/j.mib.2006.02.008, 16529981 | |
dc.description | Salanoubat, M., Genin, S., Artiguenave, F., Gouzy, J., Mangenot, S., Arlat, M., Billault, A., Boucher, C.A., Genome sequence of the plant pathogen Ralstonia solanacearum (2002) Nature, 415 (6871), pp. 497-502. , 10.1038/415497a, 11823852 | |
dc.description | Wood, D.W., Setubal, J.C., Kaul, R., Monks, D.E., Kitajima, J.P., Okura, V.K., Zhou, Y., Wu, Z., The genome of the natural genetic engineer Agrobacterium tumefaciens C58 (2001) Science, 294 (5550), pp. 2317-2323. , 10.1126/science.1066804, 11743193 | |
dc.description | Simpson, A.J.G., Reinach, F.C., Arruda, P., Abreu, F.A., Acencio, M., Alvarenga, R., Alves, L.M.C., El-Dorry, H., The genome sequence of the plant pathogen Xylella fastidiosa (2000) Nature, 406 (6792), pp. 151-157. , 10.1038/35018003, 10910347 | |
dc.description | Schneiker, S., Keller, M., Droge, M., Lanka, E., Puhler, A., Selbitschka, W., The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa (2001) Nucleic Acids Research, 29 (24), pp. 5169-5181. , 10.1093/nar/29.24.5169, 97592, 11812851 | |
dc.description | Tauch, A., Schneiker, S., Selbitschka, W., Puhler, A., van Overbeek, L.S., Smalla, K., Thomas, C.M., van Elsas, J.D., The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere (2002) Microbiology, 148 (PART 6), pp. 1637-1653 | |
dc.description | Vorholter, F.J., Niehaus, K., Puhler, A., Lipopolysaccharide biosynthesis in Xanthomonas campestris pv. campestris: a cluster of 15 genes is involved in the biosynthesis of the LPS O-antigen and the LPS core (2001) Mol Genet Genomics, 266 (1), pp. 79-95. , 10.1007/s004380100521, 11589581 | |
dc.description | Rocchetta, H.L., Burrows, L.L., Lam, J.S., Genetics of O-antigen biosynthesis in Pseudomonas aeruginosa (1999) Microbiol Mol Biol Rev, 63 (3), pp. 523-553. , 103745, 10477307 | |
dc.description | Gottig, N., Garavaglia, B.S., Daurelio, L.D., Valentine, A., Gehring, C., Orellano, E.G., Ottado, J., Xanthomonas axonopodis pv. citri uses a plant natriuretic peptide-like protein to modify host homeostasis (2008) Proc Natl Acad Sci USA, 105 (47), pp. 18631-18636. , 10.1073/pnas.0810107105, 2587547, 19015524 | |
dc.description | Ewing, B., Green, P., Base-calling of automated sequencer traces using phred. II. Error probabilities (1998) Genome Res, 8 (3), pp. 186-194 | |
dc.description | Ewing, B., Hillier, L., Wendl, M.C., Green, P., Base-calling of automated sequencer traces using phred. I. Accuracy assessment (1998) Genome Res, 8 (3), pp. 175-185 | |
dc.description | Gordon, D., Abajian, C., Green, P., Consed: a graphical tool for sequence finishing (1998) Genome Res, 8 (3), pp. 195-202 | |
dc.description | Kurtz, S., Phillippy, A., Delcher, A.L., Smoot, M., Shumway, M., Antonescu, C., Salzberg, S.L., Versatile and open software for comparing large genomes (2004) Genome Biol, 5 (2), pp. R12. , 10.1186/gb-2004-5-2-r12, 395750, 14759262 | |
dc.description | Warren, A.S., Setubal, J.C., The Genome Reverse Compiler: an explorative annotation tool (2009) BMC Bioinformatics, 10, p. 35. , 10.1186/1471-2105-10-35, 2640359, 19173744 | |
dc.description | Li, L., Stoeckert, C.J., Roos, D.S., OrthoMCL: identification of ortholog groups for eukaryotic genomes (2003) Genome Res, 13 (9), pp. 2178-2189. , 10.1101/gr.1224503, 403725, 12952885 | |
dc.description | Lima, W.C., Van Sluys, M.A., Menck, C.F., Non-gamma-proteobacteria gene islands contribute to the Xanthomonas genome (2005) Omics-a Journal of Integrative Biology, 9 (2), pp. 160-172. , 10.1089/omi.2005.9.160, 15969648 | |
dc.description | Setubal, J.C., dos Santos, P., Goldman, B.S., Ertesvag, H., Espin, G., Rubio, L.M., Valla, S., Roemer, R., Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes (2009) J Bacteriol, 191 (14), pp. 4534-4545. , 10.1128/JB.00504-09, 2704721, 19429624 | |
dc.description | Edgar, R.C., MUSCLE: multiple sequence alignment with high accuracy and high throughput (2004) Nucleic Acids Res, 32 (5), pp. 1792-1797. , 10.1093/nar/gkh340, 390337, 15034147 | |
dc.description | Castresana, J., Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis (2000) Mol Biol Evol, 17 (4), pp. 540-552 | |
dc.description | Stamatakis, A., RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models (2006) Bioinformatics, 22 (21), pp. 2688-2690. , 10.1093/bioinformatics/btl446, 16928733 | |
dc.description | Benson, G., Tandem repeats finder: a program to analyze DNA sequences (1999) Nucleic Acids Res, 27 (2), pp. 573-580. , 10.1093/nar/27.2.573, 148217, 9862982 | |
dc.description | Finn, R.D., Tate, J., Mistry, J., Coggill, P.C., Sammut, S.J., Hotz, H.R., Ceric, G., Bateman, A., The Pfam protein families database (2008) Nucleic Acids Research, (36), pp. D281-288. , 2238907, 18039703, Database | |
dc.description | White, F.F., Potnis, N., Jones, J.B., Koebnik, R., The type III effectors of Xanthomonas (2009) Molecular Plant Pathology, 10 (6), pp. 749-766. , 10.1111/j.1364-3703.2009.00590.x, 19849782 | |
dc.description | Goodner, B., Hinkle, G., Gattung, S., Miller, N., Blanchard, M., Qurollo, B., Goldman, B.S., Cielo, C., Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58 (2001) Science, 294 (5550), pp. 2323-2328. , 10.1126/science.1066803, 11743194 | |
dc.description | Segal, G., Russo, J.J., Shuman, H.A., Relationships between a new type IV secretion system and the icm/dot virulence system of Legionella pneumophila (1999) Mol Microbiol, 34 (4), pp. 799-809. , 10.1046/j.1365-2958.1999.01642.x, 10564519 | |
dc.description | Cazalet, C., Rusniok, C., Bruggemann, H., Zidane, N., Magnier, A., Ma, L., Tichit, M., Buchrieser, C., Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity (2004) Nat Genet, 36 (11), pp. 1165-1173. , 10.1038/ng1447, 15467720 | |
dc.description | Bolland, S., Llosa, M., Avila, P., de la Cruz, F., General organization of the conjugal transfer genes of the IncW plasmid R388 and interactions between R388 and IncN and IncP plasmids (1990) J Bacteriol, 172 (10), pp. 5795-5802. , 526897, 2170327 | |
dc.description | Marques, M.V., da Silva, A.M., Gomes, S.L., Genetic organization of plasmid pXF51 from the plant pathogen Xylella fastidiosa (2001) Plasmid, 45 (3), pp. 184-199. , 10.1006/plas.2000.1514, 11407914 | |
dc.description | Lee, B.M., Park, Y.J., Park, D.S., Kang, H.W., Kim, J.G., Song, E.S., Park, I.C., Go, S.J., The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice (2005) Nucleic Acids Res, 33 (2), pp. 577-586. , 10.1093/nar/gki206, 548351, 15673718 | |
dc.description | Kearney, B., Staskawicz, B.J., Widespread Distribution and Fitness Contribution of Xanthomonas campestris Avirulence Gene Avrbs2 (1990) Nature, 346 (6282), pp. 385-386. , 10.1038/346385a0, 2374611 | |
dc.description | Thieme, F., Szczesny, R., Urban, A., Kirchner, O., Hause, G., Bonas, U., New type III effectors from Xanthomonas campestris pv. vesicatoria trigger plant reactions dependent on a conserved N-myristoylation motif (2007) Molecular Plant-Microbe Interactions, 20 (10), pp. 1250-1261. , 10.1094/MPMI-20-10-1250, 17918627 | |
dc.description | Dunger, G., Pereda, R., Farah, C., Orellano, E., Jorgelina, O., Protein-protein interactions identified for effector proteins of the phytopathogen Xanthomonas axonopodis pv. citri [abstract] (2008) Proceedings of the V Congreso Argentino de Microbiologia General, , http://www.conicet.gov.ar/scp/vista_resumen.php?produccion=637809&id=97&keywords=carri | |
dc.description | Gurlebeck, D., Thieme, F., Bonas, U., Type III effector proteins from the plant pathogen Xanthomonas and their role in the interaction with the host plant (2006) Journal of Plant Physiology, 163 (3), pp. 233-255. , 10.1016/j.jplph.2005.11.011, 16386329 | |
dc.description | Furutani, A., Takaoka, M., Sanada, H., Noguchi, Y., Oku, T., Tsuno, K., Ochiai, H., Tsuge, S., Identification of Novel Type III Secretion Effectors in Xanthomonas oryzae pv. oryzae (2009) Molecular Plant-Microbe Interactions, 22 (1), pp. 96-106. , 10.1094/MPMI-22-1-0096, 19061406 | |
dc.description | Roden, J.A., Belt, B., Ross, J.B., Tachibana, T., Vargas, J., Mudgett, M.B., A genetic screen to isolate type III effectors translocated into pepper cells during Xanthomonas infection (2004) Proceedings of the National Academy of Sciences of the United States of America, 101 (47), pp. 16624-16629. , 10.1073/pnas.0407383101, 534543, 15545602 | |
dc.description | Metz, M., Dahlbeck, D., Morales, C.Q., Al Sady, B., Clark, E.T., Staskawicz, B.J., The conserved Xanthomonas campestris pv. vesicatoria effector protein XopX is a virulence factor and suppresses host defense in Nicotiana benthamiana (2005) Plant Journal, 41 (6), pp. 801-814. , 10.1111/j.1365-313X.2005.02338.x, 15743446 | |
dc.description | Guidot, A., Prior, P., Schoenfeld, J., Carrere, S., Genin, S., Boucher, C., Genomic structure and phylogeny of the plant pathogen Ralstonia solanacearum inferred from gene distribution analysis (2007) Journal of Bacteriology, 189 (2), pp. 377-387. , 10.1128/JB.00999-06, 1797399, 17085551 | |
dc.description | Park, D.S., Hyun, J.W., Park, Y.J., Kim, J.S., Kang, H.W., Hahn, J.H., Go, S.J., Sensitive and specific detection of Xanthomonas axonopodis pv. citri by PCR using pathovar specific primers based on hrpW gene sequences (2006) Microbiological Research, 161 (2), pp. 145-149. , 10.1016/j.micres.2005.07.005, 16427518 | |
dc.description | Noël, L., Thieme, F., Nennstiel, D., Bonas, U., CDNA-AFLP analysis unravels a genome-wide hrpG-regulon in the plant pathogen Xanthomonas campestris pv. vesicatoria (2001) Molecular Microbiology, 41 (6), pp. 1271-1281. , 10.1046/j.1365-2958.2001.02567.x, 11580833 | |
dc.description | Xu, R.Q., Li, X.Z., Wei, H.Y., Jiang, B., Li, K., He, Y.Q., Feng, J.X., Tang, J.L., Regulation of eight avr genes by hrpG and hrpX in Xanthomonas campestris pv. campestris and their role in pathogenicity (2006) Progress in Natural Science, 16 (12), pp. 1288-1294 | |
dc.description | Astua-Monge, G., Minsavage, G.V., Stall, R.E., Davis, M.J., Bonas, U., Jones, J.B., Resistance of Tomato and Pepper to T3 Strains of Xanthomonas campestris pv. vesicatoria Is Specified by a Plant-Inducible Avirulence Gene (2000) Molecular Plant-Microbe Interactions, 13 (9), pp. 911-921. , 10.1094/MPMI.2000.13.9.911, 10975648 | |
dc.language | en | |
dc.publisher | | |
dc.relation | BMC Genomics | |
dc.rights | aberto | |
dc.source | Scopus | |
dc.title | Novel Insights Into The Genomic Basis Of Citrus Canker Based On The Genome Sequences Of Two Strains Of Xanthomonas Fuscans Subsp. Aurantifolii | |
dc.type | Artículos de revistas | |