A Bac Library Of The Sp80-3280 Sugarcane Variety (saccharum Sp.) And Its Inferred Microsynteny With The Sorghum Genome

dc.creatorFigueira T.R.E.S.
dc.creatorOkura V.
dc.creatorRodrigues Da Silva F.
dc.creatorJose Da Silva M.
dc.creatorKudrna D.
dc.creatorAmmiraju J.S.S.
dc.creatorTalag J.
dc.creatorWing R.
dc.creatorArruda P.
dc.date2012
dc.date2015-06-25T20:24:22Z
dc.date2015-11-26T15:19:47Z
dc.date2015-06-25T20:24:22Z
dc.date2015-11-26T15:19:47Z
dc.date.accessioned2018-03-28T22:29:17Z
dc.date.available2018-03-28T22:29:17Z
dc.identifier
dc.identifierBmc Research Notes. , v. 5, n. , p. - , 2012.
dc.identifier17560500
dc.identifier10.1186/1756-0500-5-185
dc.identifierhttp://www.scopus.com/inward/record.url?eid=2-s2.0-84865238999&partnerID=40&md5=a30f47d70e1edc833974061b9160dc61
dc.identifierhttp://www.repositorio.unicamp.br/handle/REPOSIP/90210
dc.identifierhttp://repositorio.unicamp.br/jspui/handle/REPOSIP/90210
dc.identifier2-s2.0-84865238999
dc.identifier.urihttp://repositorioslatinoamericanos.uchile.cl/handle/2250/1259825
dc.descriptionBackground: Sugarcane breeding has significantly progressed in the last 30 years, but achieving additional yield gains has been difficult because of the constraints imposed by the complex ploidy of this crop. Sugarcane cultivars are interspecific hybrids between Saccharum officinarum and Saccharum spontaneum. S. officinarum is an octoploid with 2n=80 chromosomes while S. spontaneum has 2n=40 to 128 chromosomes and ploidy varying from 5 to 16. The hybrid genome is composed of 70-80%S. officinaram and 5-20%S. spontaneum chromosomes and a small proportion of recombinants. Sequencing the genome of this complex crop may help identify useful genes, either per se or through comparative genomics using closely related grasses. The construction and sequencing of a bacterial artificial chromosome (BAC) library of an elite commercial variety of sugarcane could help assembly the sugarcane genome. Results: A BAC library designated SS-SBa was constructed with DNA isolated from the commercial sugarcane variety SP80-3280. The library contains 36,864 clones with an average insert size of 125 Kb, 88% of which has inserts larger than 90 Kb. Based on the estimated genome size of 760-930 Mb, the library exhibits 5-6 times coverage the monoploid sugarcane genome. Bidirectional BAC end sequencing (BESs) from a random sample of 192 BAC clones sampled genes and repetitive elements of the sugarcane genome. Forty-five per cent of the total BES nucleotides represents repetitive elements, 83% of which belonging to LTR retrotransposons. Alignment of BESs corresponding to 42 BACs to the genome sequence of the 10 sorghum chromosomes revealed regions of microsynteny, with expansions and contractions of sorghum genome regions relative to the sugarcane BAC clones. In general, the sampled sorghum genome regions presented an average 29% expansion in relation to the sugarcane syntenic BACs. Conclusion: The SS-SBa BAC library represents a new resource for sugarcane genome sequencing. An analysis of insert size, genome coverage and orthologous alignment with the sorghum genome revealed that the library presents whole genome coverage. The comparison of syntenic regions of the sorghum genome to 42 SS-SBa BES pairs revealed that the sorghum genome is expanded in relation to the sugarcane genome. © 2012 Figueira et al; licensee BioMed Central Ltd.
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dc.languageen
dc.publisher
dc.relationBMC Research Notes
dc.rightsfechado
dc.sourceScopus
dc.titleA Bac Library Of The Sp80-3280 Sugarcane Variety (saccharum Sp.) And Its Inferred Microsynteny With The Sorghum Genome
dc.typeArtículos de revistas


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