| dc.creator | Arruda P. | |
| dc.creator | Silva T.R. | |
| dc.date | 2007 | |
| dc.date | 2015-06-30T18:38:45Z | |
| dc.date | 2015-11-26T15:01:40Z | |
| dc.date | 2015-06-30T18:38:45Z | |
| dc.date | 2015-11-26T15:01:40Z | |
| dc.date.accessioned | 2018-03-28T22:12:40Z | |
| dc.date.available | 2018-03-28T22:12:40Z | |
| dc.identifier | 9781402062971; 9781402062964 | |
| dc.identifier | Genomics-assisted Crop Improvement. Springer Netherlands, v. 2, n. , p. 483 - 494, 2007. | |
| dc.identifier | | |
| dc.identifier | 10.1007/978-1-4020-6297-1_18 | |
| dc.identifier | http://www.scopus.com/inward/record.url?eid=2-s2.0-79451472735&partnerID=40&md5=e954b1e6f78b4d4be003f3e7b5dfb56d | |
| dc.identifier | http://www.repositorio.unicamp.br/handle/REPOSIP/104139 | |
| dc.identifier | http://repositorio.unicamp.br/jspui/handle/REPOSIP/104139 | |
| dc.identifier | 2-s2.0-79451472735 | |
| dc.identifier.uri | http://repositorioslatinoamericanos.uchile.cl/handle/2250/1256329 | |
| dc.description | Sugarcane is being considered one the most important crops to meet the demand of the world bionergy needs. However the productivity in commercial plantations around the world is far way from its potential of about 300 tons/ha. Sugarcane breeding did not take advantage yet of the best plant breeding technologies, mainly because constrains imposed by the high polyploid nature of its genome. Even transgenic technologies would face difficulties because of the complex behaviour of introduced genes regarding the chromosome where the gene is inserted. One important resource to overcome at least part of these difficulties is the availability of a large collection of sugarcane Expressed Sequence Tags. The transcriptome information has allowed the identification of genes involved in biotic and abiotic stress response, disease resistance and sucrose accumulation. In additioncomparative mapping has allowed the identification in sugarcane disease resistance genes already mapped in sorghum and maize. In this chapter we discuss the use of transcriptome resources for sugarcane improvement. | |
| dc.description | 2 | |
| dc.description | | |
| dc.description | 483 | |
| dc.description | 494 | |
| dc.description | Alexander, A.G., (1985) The Energy Cane Alternative, , Elsevier, New York | |
| dc.description | Araujo, P.G., Rossi, M., De Jesus, E.M., Saccaro, N.L., Jr., Kajihara, D., Massa, R., De Felix, J.M., Van Sluys, M.A., Transcriptionally active transposable elements in recent hybrid sugarcane (2005) Plant J, 44, pp. 707-717 | |
| dc.description | Arruda, P., Sugarcane transcriptome: A landmark in plant genomics in the tropics (2001) Genet Mol Biol, 24, pp. 1-296 | |
| dc.description | Asnaghi, C., Paulete, F., Kaye, C., Grivet, L., Deu, M., Glaszmann, J.-C., D'Hont, A., Application of synteny across Poaceae to determine the map location of a sugarcane rust resistance gene (2000) Theor Appl Genet, 101, pp. 962-969 | |
| dc.description | Asnaghi, C., Roques, D., Ruffel, S., Kaye, C., Hoarau, J.Y., Telismart, H., Girard, J.C., D'Hont, A., Targeted mapping of a sugarcane rust resistance gene (Bru1) using bulked segregant analysis and AFLP markers (2004) Theor Appl Genet, 108, pp. 759-764 | |
| dc.description | Bennetzen, J.L., Freeling, M., Grasses as a single genetic system: Genome composition, collinearity and compatibility (1993) Trends Genet, 9, pp. 259-261 | |
| dc.description | Bennetzen, J.L., Freeling, M., The unified grass genome: Synergy in synteny (1997) Genome Res, 7, pp. 301-306 | |
| dc.description | Berding, N., Roach, B.T., Germplasm collection, maintenance, and use (1987) Sugarcane Improvement Through Breeding, pp. 143-210. , Heinz DJ ed, Elsevier, New York | |
| dc.description | Borecký, J., Nogueira, F.T.S., De Oliveira, K.A.P., Maia, I.G., Vercesi, A.E., Arruda, P., The plant energydissipating mitochondrial systems: Depicting the genomic structure and the expression profiles of the gene families of uncoupling protein and alternative oxidase in monocots and dicots (2006) J Exp Bot, 57, pp. 849-864 | |
| dc.description | Botha, F.C., Black, K.G., Sucrose phosphate synthase and sucrose synthase activity during maturation of internodal tissue in sugarcane (2000) Aust J Plant Physiol, 27, pp. 81-85 | |
| dc.description | Bower, N.I., Casu, R.E., Maclean, D.J., Reverter, A., Chapmann, S.C., Manners, J.M., Transcriptional response of sugarcane roots to methyl jasmonate (2005) Plant Sci, 168, pp. 761-772 | |
| dc.description | Bull, T.A., Glasziou, K.T., The evolutionary significance of sugar accumulation in Saccharum (1963) Aust J Biol Sci, 16, pp. 737-742 | |
| dc.description | Butterfield, M.K., D'Hont, A., Berding, N., The sugarcane genome: A synthesis of current understanding, and lessons for breeding and biotechnology (2001) Proc S Afr Sug Technol Ass, 75, pp. 1-5 | |
| dc.description | Carson, D.L., Botha, F.C., Preliminary analysis of expressed sequence tags for sugarcane (2000) Crop Sci, 40, pp. 1769-1779 | |
| dc.description | Casu, R.E., Grof, C.P.L., Rae, A.L., McIntyre, C.L., Dimmock, C.M., Manners, J.M., Identification of a novel sugar transporter homologue strongly expressed in maturing stem vascular tissues of sugarcane by expressed sequence tag and microarray analysis (2003) Plant Mol Biol, 52, pp. 371-386 | |
| dc.description | Casu, R.E., Dimmock, C.M., Chapman, S.C., Grof, C.P.L., McIntyre, C.L., Bonnett, G.D., Manners, J.M., Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling (2004) Plant Mol Biol, 54, pp. 503-517 | |
| dc.description | Casu, R.E., Manners, J.M., Bonnett, G.D., Jackson, P.A., McIntyre, C.L., Dunne, R., Chapman, S.C., Grof, C.P.L., Genomics approaches for the identification of genes determining important traits in sugarcane (2005) Field Crop Res, 92, pp. 137-147 | |
| dc.description | Cordeiro, G.M., Eliott, F., McIntyre, C.L., Casu, R.E., Henry, R.J., Characterisation of single nucleotide polymorphisms in sugarcane ESTs (2006) Theor Appl Genet, 113, pp. 331-343 | |
| dc.description | Da Silva, J.A., Bressiani, J.A., Sucrose synthase molecular marker associated with sugar content in elite sugarcane progeny (2005) Genet Mol Biol, 28, pp. 294-298 | |
| dc.description | De Rosa, V.E., Jr., Nogueira, F.T.S., Menossi, M., Ulian, E.C., Arruda, P., Identification of methyl jasmonate-responsive genes in sugarcane using cDNA arrays (2005) Braz J Plant Physiol, 17, pp. 173-180 | |
| dc.description | D'Hont, A., Unravelling the genome structure of polyploids using FISH and GISH | |
| dc.description | examples of sugarcane and banana (2005) Cytogent Genomics Res, 109, pp. 27-33 | |
| dc.description | D'Hont, A., Glaszmann, J.C., Sugarcane genome analysis with molecular markers, a first decade of research (2001) Proc Int Soc Sugarcane Technol, 24, pp. 556-559 | |
| dc.description | Dufour, P., Deu, M., Grivet, L., D'Hont, A., Paulet, F., Bouet, A., Lanaud, C., Hamon, P., Construction of a composite sorghum genome map and comparison with sugarcane, a related complex polyploid (1997) Theor Appl Genet, 94, pp. 409-418 | |
| dc.description | Gianotti, A., Rios, W.M., Soares-Costa, A., Nogaroto, V., Carmona, A.K., Oliva, M.L., Andrade, S.S., Henrique-Silva, F., Recombinant expression, purification, and functional analysis of two novel cystatins from sugarcane (Saccharum officinarum) (2006) Protein Expr Purif, 47, pp. 483-489 | |
| dc.description | Glaszmann, J.C., Dufour, P., Grivet, L., D'Hont, A., Deu, M., Paulet, F., Hamon, P., Comparative genome analysis between several tropical grasses (1997) Euphytica, 96, pp. 13-21 | |
| dc.description | Graham, M.A., Marek, L.F., Lohnes, D., Cregan, P., Schoemaker, R.C., Expression and genome organization of resistance gene analogs in soybean (2000) Genome, 43, pp. 86-93 | |
| dc.description | Grivet, L., Arruda, P., Sugarcane genomics: Depicting the complex genome of an important tropical crop (2002) Curr Opin Plant Biol, 5, pp. 122-127 | |
| dc.description | Grivet, L., Glaszmann, J.C., Vincentz, M., Da Silva, F.R., Arruda, P., ESTs as a source for sequence polymorphism discovery in sugarcane: Example of the Adh genes (2003) Theor Appl Genet, 106, pp. 190-197 | |
| dc.description | Guimarães, C.T., Sills, G.R., Sobral, B.W.S., Comparative mapping of Andropogoneae: Saccharum L. (sugarcane) and its relation to sorghum and maize (1997) Proc Natl Acad Sci USA, 94, pp. 14261-14266 | |
| dc.description | Huang, X., Madan, A., CAP3: A DNA sequence assembly program (1999) Genome Res, 9, pp. 868-877 | |
| dc.description | Jannoo, N., Grivet, L., D'Hont, A., Arruda, P., Genomic sequencing in sugarcane: First insight into the physical organization of the genome and microsynteny with other grasses (2003) Abstracts of PAG XI Conference, , http://www.intl-pag.org//11/abstracts/W26_W182_XI.html, San Diego, Abstract W182. URL | |
| dc.description | Ma, H.M., Schulze, S., Lee, S., Yang, M., Mirkov, E., Irvine, J., Moore, P., Paterson, A., An EST survey of the sugarcane transcriptome (2004) Theor Appl Genet, 108, pp. 851-863 | |
| dc.description | McIntyre, C.L., Homologues of the maize rust resistance gene Rp1-D are genetically associated with a major rust resistance QTL in sorghum (2004) Theor Appl Genet, 109, pp. 875-883 | |
| dc.description | McIntyre, C.L., Casu, R.E., Drenth, J., Knight, D., Whan, V.A., Croft, B.J., Jordan, D.R., Manners, J.M., Resistance gene analogues in sugarcane and sorghum and their association with quantitative trait loci for rust resistance (2005) Genome, 48, pp. 391-400 | |
| dc.description | Michelmore, R.W., Meyers, B.C., Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process (1998) Genome Res, 8, pp. 1113-1130 | |
| dc.description | Ming, R., Alignment of the Sorghum and Saccharum chromosomes: Comparative genome organization and evolution of a polysomic polyploid genus and its diploid cousin (1998) Genetics, 150, pp. 1663-1682 | |
| dc.description | Moore, P., Temporal and spatial regulation of sucrose accumulation in the sugarcane stem (1995) Aust J Plant Physiol, 22, pp. 661-679 | |
| dc.description | Nogueira, F.T.S., De Rosa, V.E., Menossi, M., Ulian, E.C., Arruda, P., RNA expression profiles and data mining of sugarcane response to low temperature (2003) Plant Physiol, 132, pp. 1811-1824 | |
| dc.description | Nogueira, F.T.S., Schlogl, P.S., Camargo, S.R., Fernandez, J.H., De Rosa, V.E., Pompermayer, P., Arruda, P., SsNAC23, a member of the NAC domain protein family, is associated with cold, herbivory and water stress in sugarcane (2005) Plant Sci, 169, pp. 93-106 | |
| dc.description | Papini-Terzi, F.S., Rocha, F.R., Vêncio, R.Z.N., Oliveira, K.C., Felix, J.M., Vicentini, R., Rocha, C.S., Souza, G.M., Transcription profiling of signal transduction-related genes in sugarcane tissues (2005) DNA Res, 12, pp. 27-38 | |
| dc.description | Pinto, L.R., Oliveira, K.M., Ulian, E.C., Garcia, A.A.F., De Souza, A.P., Survey in the sugarcane expressed sequence tag database (SUCEST) for simple sequence repeats (2004) Genome, 47, pp. 795-804 | |
| dc.description | Riechmann, J.L., Heard, J., Martin, G., Reuber, L., Jiang, C., Keddie, J., Adam, L., Samaha, R.R., Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes (2000) Science, 290, pp. 2105-2110 | |
| dc.description | Rossi, M., Araujo, P.G., Paulet, F., Garsmeur, O., Dias, V.M., Chen, H., Van Sluys, M.A., D'Hont, A., Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane (2004) Mol Genet Genomics, 269, pp. 406-419 | |
| dc.description | Rossi, M., Araujo, P.G., De Jesus, E.M., Varani, A.M., Van Sluys, M.A., Comparative analysis of Mutator-like transposases in sugarcane (2004) Mol Genet Genomics, 272, pp. 194-203 | |
| dc.description | Rossi, M., Araujo, P.G., Paulet, F., Garsmeur, O., Dias, V., Hui, C., Van Sluys, M.A., D'Hont, A., Genome distribution and characterization of EST derived sugarcane resistance gene analogs (2003) Mol Genet Genomics, 269, pp. 406-419 | |
| dc.description | Souza, G.M., The sugarcane signal transduction (SUCAST) catalogue: Prospecting signal transduction in sugarcane (2001) Genet Mol Biol, 24, pp. 25-34 | |
| dc.description | Sreenivasan, T.V., Ahloowalia, B.S., Heinz, D.J., Cytogenetics (1987) Sugarcane Improvement Through Breeding, pp. 211-253. , Heinz DJ ed, Elsevier, New York | |
| dc.description | Telles, G.P., Da Silva, F.R., Trimming and clustering sugarcane ESTs (2001) Genet Mol Biol, 24, pp. 17-23 | |
| dc.description | Vercesi, A.E., Borecký, J., Maia, I.G., Arruda, P., Cuccovia, I.M., Chaimovich, H., Plant uncoupling mitochondrial proteins (2006) Annu Rev Plant Biol, 57, pp. 383-404 | |
| dc.description | Vettore, A.L., Da Silva, F.R., Kemper, E.L., Arruda, P., The libraries that made SUCEST (2001) Genet Mol Biol, 24, pp. 1-7 | |
| dc.description | Vettore, A.L., Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane (2003) Genome Res, 13, pp. 2725-2735 | |
| dc.description | Vincentz, M., Evaluation of monocot and eudicot divergence using the sugarcane transcriptome (2004) Plant Physiol, 134, pp. 951-959 | |
| dc.description | Walsh, K.B., Sky, R.B., Brown, S.M., The anatomy of the pathway of sucrose unloading within the sugarcane stem (2005) Funct Plant Biol, 32, pp. 367-374 | |
| dc.description | Wang, M.-B., Wesley, S.V., Finnegan, E.J., Smith, N.A., Waterhouse, P.M., Replicating satellite RNA induces sequence-specific DNA methylation and truncated transcripts in plants (2001) RNA, 7, pp. 16-28 | |
| dc.description | Whittaker, A., Botha, F.C., Carbon partitioning during sucrose accumulation in sugarcane internodal tissue (1997) Plant Physiol, 115, pp. 1651-1659 | |
| dc.language | en | |
| dc.publisher | Springer Netherlands | |
| dc.relation | Genomics-Assisted Crop Improvement | |
| dc.rights | fechado | |
| dc.source | Scopus | |
| dc.title | Transcriptome Analysis Of The Sugarcane Genome For Crop Improvement | |
| dc.type | Capítulos de libros | |
