dc.creator | Oliveira M.T. | |
dc.creator | Barau J.G. | |
dc.creator | Junqueira A.C.M. | |
dc.creator | Feijao P.C. | |
dc.creator | Rosa A.C.d. | |
dc.creator | Abreu C.F. | |
dc.creator | Azeredo-Espin A.M.L. | |
dc.creator | Lessinger A.C. | |
dc.date | 2008 | |
dc.date | 2015-06-30T19:35:18Z | |
dc.date | 2015-11-26T14:45:57Z | |
dc.date | 2015-06-30T19:35:18Z | |
dc.date | 2015-11-26T14:45:57Z | |
dc.date.accessioned | 2018-03-28T21:55:20Z | |
dc.date.available | 2018-03-28T21:55:20Z | |
dc.identifier | | |
dc.identifier | Molecular Phylogenetics And Evolution. , v. 48, n. 3, p. 850 - 857, 2008. | |
dc.identifier | 10557903 | |
dc.identifier | 10.1016/j.ympev.2008.05.022 | |
dc.identifier | http://www.scopus.com/inward/record.url?eid=2-s2.0-50249174997&partnerID=40&md5=cbcdb506c93a6a559bfd3a56149b03fb | |
dc.identifier | http://www.repositorio.unicamp.br/handle/REPOSIP/106765 | |
dc.identifier | http://repositorio.unicamp.br/jspui/handle/REPOSIP/106765 | |
dc.identifier | 2-s2.0-50249174997 | |
dc.identifier.uri | http://repositorioslatinoamericanos.uchile.cl/handle/2250/1252642 | |
dc.description | We present the first two mitochondrial genomes of Muscidae dipterans for the species Haematobia irritans (the horn fly) and Stomoxys calcitrans (the stable fly). Typical insect mtDNA features are described, such as a high A + T content (79.1% and 78.9%, respectively), the preference for A + T-rich codons, and the evidence of a non-optimal codon usage. The strong A + T enrichment partially masks another nucleotide content bias maintained by A + C mutation pressure in these Muscidae mtDNAs. The analysis of this data provides a model of metazoans tRNA anticodon evolution, based on the selection hypothesis of anticodon versatility. H. irritans mitochondrial genome (16078 bp) is structurally similar to the hypothetical ancestral mitochondrial genome of arthropods and its control region (A + T-rich region in insects) organization is consistent with the structure described for Brachycera dipterans. On the other hand, the mitochondrial genome of S. calcitrans is ∼2 kb longer (18 kb), characterized by the presence of ∼550 bp tandem repeats in the control region, and an extra copy of trnI remarkably similar to a duplicated element of blowflies mtDNA. Putative sequence elements, involved in the regulation of transcription and replication of the mtDNA, were reliably identified in S. calcitrans control region despite the 0.8-1.5 kb gap uncovered from this genome. The use of amino acid and nucleotide sequences of concatenated mitochondrial protein-coding genes (PCGs) in phylogenetic reconstructions of Diptera does not support the monophyly of Muscomorpha, as well as the monophyly of Acalyptratae. Within the Calyptratae group, the inclusion of Muscidae (Muscoidea) as a sister group of Calliphoridae (Oestroidea) implies in a potential conflict concerning the monophyly of the superfamily Oestroidea. © 2008 Elsevier Inc. All rights reserved. | |
dc.description | 48 | |
dc.description | 3 | |
dc.description | 850 | |
dc.description | 857 | |
dc.description | Abascal, F., Zardoya, R., Posada, D., ProtTest: selection of best-fit models of protein evolution (2005) Bioinformatics, 21, pp. 2104-2105 | |
dc.description | Agris, P.F., Decoding the genome: a modified view (2004) Nucleic Acids Res., 32, pp. 223-238 | |
dc.description | Anderson, S., de Brujin, M.H.L., Coulson, A.R., Eperon, I.C., Sanger, F., Young, I.G., Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian genome (1982) J. Mol. Evol., 156, pp. 683-717 | |
dc.description | Barau, J.G., Azeredo-Espin, A.M.L., Lessinger, A.C., Conservation and versatility of a new set of primers for long-PCR amplification of complete insect mitochondrial genomes based on Haematobia irritans mtDNA sequences (2005) Mol. Ecol. Notes, 5, pp. 885-887 | |
dc.description | Bernasconi, M.V., Valsangiacomo, C., Piffaretti, J.C., Ward, P.I., Phylogenetic relationships among Muscoidea (Diptera: Calyptratae) based on mitochondrial DNA sequences (2000) Insect Mol. Biol., 9, pp. 67-74 | |
dc.description | Black IV, W.C., Roehrdanz, R.L., Mitochondrial gene order is not conserved in arthropods: prostriate and metastriate tick mitochondrial genomes (1998) Mol. Biol. Evol., 15, pp. 1772-1785 | |
dc.description | Boore, J.L., Animal mitochondrial genomes (1999) Nucleic Acids Res., 27, pp. 1767-1780 | |
dc.description | Boore, J.L., Macey, J.R., Medina, M., Sequencing and comparing whole mitochondrial genomes of animals (2005) Methods Enzymol., 395, pp. 311-348 | |
dc.description | Bulmer, M., Coevolution of codon usage and transfer RNA abundance (1987) Nature, 325, pp. 728-730 | |
dc.description | Cameron, S.L., Lambkin, C.L., Barker, S.C., Whiting, M.F., A mitochondrial genome phylogeny of Diptera: whole genome sequence data accurately resolve relationships over broad timescale with high precision (2007) Syst. Entomol., 32, pp. 40-59 | |
dc.description | Carapelli, A., Liò, P., Nardi, F., van der Wath, E., Frati, F., Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea (2007) BMC Evol. Biol., 7 (SUPPL. 2), pp. S8 | |
dc.description | Clary, D.O., Wolstenholme, D.R., The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization and genetic code (1985) J. Mol. Evol., 22, pp. 252-271 | |
dc.description | Covacin, C., Shao, R., Cameron, S., Barker, S.C., Extraordinary number of gene rearrangements in the mitochondrial genomes of lice (Phthiraptera: Insecta) (2006) Insect Mol. Biol., 15, pp. 63-68 | |
dc.description | Crozier, R.H., Crozier, Y.C., The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization (1993) Genetics, 133, pp. 97-117 | |
dc.description | Feijão, P.C., Neiva, L.S., Azeredo-Espin, A.M.L., Lessinger, A.C., AMiGA: the arthropodan mitochondrial genomes accessible database (2006) Bioinformatics, 22, pp. 902-903 | |
dc.description | Flook, P.K., Rowell, C.H., Gellissen, G., The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome (1995) J. Mol. Evol., 41, pp. 928-941 | |
dc.description | Goddard, J.M., Wolstenholme, D.R., Origin and direction of replication in mitochondrial DNA molecules from genus Drosophila (1980) Nucleic Acids Res., 8, pp. 741-757 | |
dc.description | Gordon, D., Abajian, C., Green, P., CONSED: a graphical tool for sequence finishing (1998) Genome Res., 8, pp. 195-202 | |
dc.description | Griffiths, G.C.D., Relationships among the major subgroups of Brachycera (Diptera): a critical review (1994) Can. Entomol., 126, pp. 861-880 | |
dc.description | Grimaldi, D.A., A phylogenetic, revised classification of genera in the Drosophilidae (Diptera) (1990) Bull. Am. Mus. Nat. Hist., 197, pp. 1-139 | |
dc.description | Guindon, S., Gascuel, O., A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood (2003) Syst. Biol., 52, pp. 696-704 | |
dc.description | Hassanin, A., Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution (2006) Mol. Phylogenet. Evol., 38, pp. 100-116 | |
dc.description | Haufe, W.O., Host-parasite interaction of blood feeding dipterans in health and productivity of mammals (1987) Int. J. Parasitol., 17, pp. 607-614 | |
dc.description | Huelsenbeck, J.P., Ronquist, F., MRBAYES: Bayesian inference of phylogeny (2001) Bioinformatics, 17, pp. 754-755 | |
dc.description | Hickerson, M.J., Cunningham, C.W., Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura) (2000) Mol. Biol. Evol., 17, pp. 639-644 | |
dc.description | Hwang, U.W., Friedrich, M., Tautz, D., Park, C.J., Kim, W., Mitochondrial protein phylogeny joins myriapods with chelicerates (2001) Nature, 413, pp. 154-157 | |
dc.description | Hwang, U.W., Park, C.J., Yong, T.S., Kim, W., One-step PCR amplification of complete arthropod mitochondrial genomes (2001) Mol. Phylogenet. Evol., 19, pp. 345-352 | |
dc.description | Infante-Vargas, M.E., Azeredo-Espin, A.M.L., Genetic variability in mitochondrial DNA of screwworm, Cochliomyia hominivorax (Diptera: Calliphoridae), from Brazil (1995) Biochem. Genet., 33, pp. 237-256 | |
dc.description | Junqueira, A.C.M., Lessinger, A.C., Torres, T.T., da Silva, F.R., Vettore, A.L., Arruda, P., Azeredo-Espin, A.M.L., The complete mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae) (2004) Gene, 339, pp. 7-15 | |
dc.description | Krzywinski, J., Grushko, O.G., Besansky, N.J., Analysis of the complete mitochondrial DNA from Anopheles funestus: an improved dipteran mitochondrial genome annotation and a temporal dimension of mosquito evolution (2006) Mol. Phylogenet. Evol., 39, pp. 417-423 | |
dc.description | Lessinger, A.C., Junqueira, A.C.M., Lemos, T.A., Kemper, E.L., da Silva, F.R., Vettore, A.L., Arruda, P., Azeredo-Espin, A.M.L., The mitochondrial genome of the primary screwworm fly Cochliomyia hominivorax (Diptera: Calliphoridae) (2000) Insect Mol. Biol., 9, pp. 521-529 | |
dc.description | Lessinger, A.C., Junqueira, A.C.M., Conte, F.F., Azeredo-Espin, A.M.L., Analysis of a conserved duplicated tRNA gene in the mitochondrial genome of blowflies (2004) Gene, 339, pp. 1-6 | |
dc.description | Lowe, T.M., Eddy, S.R., tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequences (1997) Nucleic Acids Res., 25, pp. 955-964 | |
dc.description | McAlpine, J.F., Wood, D.M., (1989) Manual of Neartic Diptera Volume 3, , Research Branch Agriculture Canada, Ottawa, Ontario (pp.1492-1502) | |
dc.description | Miller, A.D., Nguyen, T.T., Burridge, C.P., Austin, C.M., Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): a novel gene order revealed (2004) Gene, 331, pp. 65-72 | |
dc.description | Mitchell, S.E., Cockburn, A.F., Seawright, J.A., The mitochondrial genome of Anopheles quadrimaculatus species A: complete nucleotide sequence and gene organization (1993) Genome, 36, pp. 1058-1073 | |
dc.description | Morlais, I., Severson, D.W., Complete mitochondrial DNA sequence and amino acid analysis of the cytochrome c oxidase subunit I (COI) from Aedes aegypti (2002) DNA Seq., 13, pp. 123-127 | |
dc.description | Nardi, F., Carapelli, A., Fanciulli, P.P., Dallai, R., Frati, F., The complete mitochondrial DNA sequence of the basal hexapod Tetrodontophora bielanensis: evidence for heteroplasmy and tRNA translocations (2001) Mol. Biol. Evol., 18, pp. 1293-1304 | |
dc.description | Nardi, F., Spinsanti, G., Boore, J.L., Carapelli, A., Dallai, R., Frati, F., Hexapod origins: monophyletic or paraphyletic? (2003) Science, 299, pp. 1887-1889 | |
dc.description | Nirmala, X., Hypsa, V., Zurovec, M., Molecular phylogeny of Calyptratae (Diptera: Brachycera): the evolution of 18S and 16S ribosomal rDNAs in higher dipterans and their use in phylogenetic inference (2001) Insect Mol. Biol., 10, pp. 475-485 | |
dc.description | O'Grady, P.M., Kidwell, M.G., Phylogeny of the subgenus Sophophora (Diptera: Drosophilidae) based on combined analysis of nuclear and mitochondrial sequences (2002) Mol. Phylogenet. Evol., 22, pp. 442-453 | |
dc.description | Ojala, D., Montaya, J., Attardi, G., tRNA punctuation model of RNA processing in human mitochondria (1981) Nature, 290, pp. 470-474 | |
dc.description | Oliveira, M.T., Azeredo-Espin, A.M.L., Lessinger, A.C., Evolutionary and structural analysis of the cytochrome c oxidase subunit I (COI) gene from Haematobia irritans, Stomoxys calcitrans and Musca domestica mitochondrial DNA (2005) DNA Seq., 16, pp. 156-160 | |
dc.description | Oliveira, M.T., Azeredo-Espin, A.M.L., Lessinger, A.C., The mitochondrial DNA control region of Muscidae flies: evolution and structural conservation in a dipteran context (2007) J. Mol. Evol., 64, pp. 519-527 | |
dc.description | Oliveira, M.T., da Rosa, A.C., Azeredo-Espin, A.M.L., Lessinger, A.C., Improving access to the control region and tRNA gene clusters of dipteran mitochondrial DNA (2006) J. Med. Entomol., 43, pp. 636-639 | |
dc.description | Perna, N.T., Kocher, T.D., Patterns of nucleotide composition at fourfold degenerated sites of animal mitochondrial genomes (1995) J. Mol. Evol., 41, pp. 353-359 | |
dc.description | Posada, D., Crandall, K.A., Modeltest: testing the model of DNA substitution (1998) Bioinformatics, 14, pp. 817-818 | |
dc.description | Reyes, A., Gissi, C., Pesole, G., Saccone, C., Asymmetrical directional mutation pressure in the mitochondrial genome of mammals (1998) Mol. Biol. Evol., 15, pp. 957-966 | |
dc.description | Roehrdanz, R.L., Degrugillier, M.E., Black IV, W.C., Novel rearrangements of arthropod mitochondrial DNA detected with long-PCR: applications to arthropod phylogeny and evolution (2002) Mol. Biol. Evol., 19, pp. 841-849 | |
dc.description | Ronquist, F., Huelsenbeck, J.P., MRBAYES 3: Bayesian phylogenetic inference under mixed models (2003) Bioinformatics, 19, pp. 1572-1574 | |
dc.description | Russo, C.A.M., Takezaki, N., Nei, M., Molecular phylogeny and divergence times of drosophilid species (1995) Mol. Biol. Evol., 12, pp. 391-404 | |
dc.description | Saccone, C., De Giorgi, C., Gissi, C., Pesole, G., Reyes, A., Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system (1999) Gene, 238, pp. 195-209 | |
dc.description | Saito, S., Tamura, K., Aotsuka, T., Replication origin of mitochondrial DNA in insects (2005) Genetics, 171, pp. 1695-1705 | |
dc.description | Shao, R., Barker, S.C., The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes (2003) Mol. Biol. Evol., 20, pp. 362-370 | |
dc.description | Shao, R., Barker, S.C., Mitani, H., Aoki, Y., Fukunaga, M., Evolution of duplicate control regions in the mitochondrial genomes of Metazoa: a case study with Australasian Ixodes ticks (2005) Mol. Biol. Evol., 22, pp. 620-629 | |
dc.description | Shao, R., Campbell, N.J., Barker, S.C., Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthitaptera) (2001) Mol. Biol. Evol., 18, pp. 858-865 | |
dc.description | Silvestre, D., 2002. Sequenciamento e análise do genoma mitocondrial de Melipona bicolor (Hymenoptera, Apidae, Meliponini). Master Thesis, Universidade de São Paulo, São Paulo, BrazilSimon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H., Flook, P., Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers (1994) Ann. Entomol. Soc. Am., 87, pp. 651-701 | |
dc.description | Spanos, L., Koutroumbas, G., Kotsyfakis, M., Louis, C., The mitochondrial genome of the Mediterannean fruitfly, Ceratitis capitata (2000) Insect Mol. Biol., 9, pp. 139-144 | |
dc.description | Stanton, D.J., Daehler, L.L., Moritz, C.C., Brown, W.M., Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA (1994) Genetics, 137, pp. 233-241 | |
dc.description | Stewart, J.B., Beckenbach, A.T., Insect mitochondrial genomics: the complete mitochondrial genome sequence of the meadow spittlebug Philaenus spumarius (Hemiptera: Auchnorrhyncha: Cercopoidae) (2005) Genome, 48, pp. 46-54 | |
dc.description | Sun, H., Zhou, K., Song, D., Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements (2005) Gene, 349, pp. 207-217 | |
dc.description | Tamura, K., Dudley, J., Nei, M., Kumar, S., MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 (2007) Mol. Biol. Evol., 24, pp. 1596-1599 | |
dc.description | Thao, M.L., Baumman, L., Baumman, P., Organization of the mitochondrial genomes of whiteflies, aphids, and psyllids (Hemiptera, Sternorrhyncha) (2004) BMC Evol. Biol., 4, p. 25 | |
dc.description | Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools (1997) Nucleic Acids Res., 24, pp. 4876-4882 | |
dc.description | Tong, K.L., Wong, J.T., Anticodon and wobble evolution (2004) Gene, 333, pp. 169-177 | |
dc.description | Wiegmann, B.M., Yeates, D.K., Thorne, J.L., Kishino, H., Time flies, a new molecular time scale for brachyceran fly evolution without a clock (2003) Syst. Biol., 52, pp. 745-756 | |
dc.description | Woodley, N.E., (1989) Phylogeny and classification of the 'Orthoraphous' Brachycera. Manual of Neartic Diptera, 3. , Research Branch, Agriculture Canada, Ottawa | |
dc.description | Wyman, S.K., Jansen, R.K., Boore, J.L., Automatic annotation of organellar genomes with DOGMA (2004) Bioinformatics, 20, pp. 3252-3255 | |
dc.description | Xia, X., Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes (2005) Gene, 345, pp. 13-20 | |
dc.description | Yang, Z., Estimating the pattern of nucleotide substitution (1994) J. Mol. Evol., 39, pp. 105-111 | |
dc.description | Yamauchi, M.M., Miya, M.U., Nichida, M., Use of a PCR-based approach for sequencing whole mitochondrial genomes of insects: two examples (cockroach and dragonfly) based on the method developed for decapod crustaceans (2004) Insect Mol. Biol., 13, pp. 435-442 | |
dc.description | Yeates, D.K., Wiegmann, B.M., Congruency and controversy: toward a higher-level phylogeny of Diptera (1999) Annu. Rev. Entomol., 44, pp. 397-428 | |
dc.description | Yeates, D.K., Relationships of extant Brachycera (Diptera): a quantitative synthesis of morphological characters (2002) Zool. Scr., 31, pp. 105-121 | |
dc.description | Yeates, D.K., Wiegmann, B.M., Phylogeny and evolution of Diptera: recent insights and new perspectives (2005) Evolutionary Biology of Flies, pp. 14-44. , Yeates D.K., and Wiegmann B.M. (Eds), Columbia University Press, New York | |
dc.language | en | |
dc.publisher | | |
dc.relation | Molecular Phylogenetics and Evolution | |
dc.rights | fechado | |
dc.source | Scopus | |
dc.title | Structure And Evolution Of The Mitochondrial Genomes Of Haematobia Irritans And Stomoxys Calcitrans: The Muscidae (diptera: Calyptratae) Perspective | |
dc.type | Artículos de revistas | |