A Genome Survey Of Moniliophthora Perniciosa Gives New Insights Into Witches' Broom Disease Of Cacao

dc.creatorMondego J.M.C.
dc.creatorCarazzolle M.F.
dc.creatorCosta G.G.L.
dc.creatorFormighieri E.F.
dc.creatorParizzi L.P.
dc.creatorRincones J.
dc.creatorCotomacci C.
dc.creatorCarraro D.M.
dc.creatorCunha A.F.
dc.creatorCarrer H.
dc.creatorVidal R.O.
dc.creatorEstrela R.C.
dc.creatorGarcia O.
dc.creatorThomazella D.P.T.
dc.creatorde Oliveira B.V.
dc.creatorPires A.B.L.
dc.creatorRio M.C.
dc.creatorAraujo M.R.R.
dc.creatorde Moraes M.H.
dc.creatorCastro L.A.B.
dc.creatorGramacho K.P.
dc.creatorGoncalves M.S.
dc.creatorNeto J.P.M.
dc.creatorNeto A.G.
dc.creatorBarbosa L.V.
dc.creatorGuiltinan M.J.
dc.creatorBailey B.A.
dc.creatorMeinhardt L.W.
dc.creatorCascardo J.C.M.
dc.creatorPereira G.A.G.
dc.date2008
dc.date2015-06-30T19:13:11Z
dc.date2015-11-26T14:39:37Z
dc.date2015-06-30T19:13:11Z
dc.date2015-11-26T14:39:37Z
dc.date.accessioned2018-03-28T21:45:23Z
dc.date.available2018-03-28T21:45:23Z
dc.identifier
dc.identifierBmc Genomics. , v. 9, n. , p. - , 2008.
dc.identifier14712164
dc.identifier10.1186/1471-2164-9-548
dc.identifierhttp://www.scopus.com/inward/record.url?eid=2-s2.0-60849102140&partnerID=40&md5=1bad464b716a57c902d0d77593f5dc6e
dc.identifierhttp://www.repositorio.unicamp.br/handle/REPOSIP/105291
dc.identifierhttp://repositorio.unicamp.br/jspui/handle/REPOSIP/105291
dc.identifier2-s2.0-60849102140
dc.identifier.urihttp://repositorioslatinoamericanos.uchile.cl/handle/2250/1250067
dc.descriptionBackground: The basidiomycete fungus Moniliophthora perniciosa is the causal agent of Witches' Broom Disease (WBD) in cacao (Theobroma cacao). It is a hemibiotrophic pathogen that colonizes the apoplast of cacao's meristematic tissues as a biotrophic pathogen, switching to a saprotrophic lifestyle during later stages of infection. M. perniciosa, together with the related species M. roreri, are pathogens of aerial parts of the plant, an uncommon characteristic in the order Agaricales. A genome survey (1.9× coverage) of M. perniciosa was analyzed to evaluate the overall gene content of this phytopathogen. Results: Genes encoding proteins involved in retrotransposition, reactive oxygen species (ROS) resistance, drug efflux transport and cell wall degradation were identified. The great number of genes encoding cytochrome P450 monooxygenases (1.15% of gene models) indicates that M. perniciosa has a great potential for detoxification, production of toxins and hormones; which may confer a high adaptive ability to the fungus. We have also discovered new genes encoding putative secreted polypeptides rich in cysteine, as well as genes related to methylotrophy and plant hormone biosynthesis (gibberellin and auxin). Analysis of gene families indicated that M. perniciosa have similar amounts of carboxylesterases and repertoires of plant cell wall degrading enzymes as other hemibiotrophic fungi. In addition, an approach for normalization of gene family data using incomplete genome data was developed and applied in M. perniciosa genome survey. Conclusion: This genome survey gives an overview of the M. perniciosa genome, and reveals that a significant portion is involved in stress adaptation and plant necrosis, two necessary characteristics for a hemibiotrophic fungus to fulfill its infection cycle. Our analysis provides new evidence revealing potential adaptive traits that may play major roles in the mechanisms of pathogenicity in the M. perniciosa/ cacao pathosystem. © 2008 Mondego et al; licensee BioMed Central Ltd.
dc.description9
dc.description
dc.description
dc.description
dc.descriptionPurdy, L.H., Schmidt, R.A., Status of cacao witches' broom: Biology, epidemiology, and management (1996) Annu Rev Phytopathol, 34, pp. 573-594. , 10.1146/annurev.phyto.34.1.573 15012557
dc.descriptionAime, M.C., Phillips-Mora, W., The causal agents of witches' broom and frosty pod rot of cacao (chocolate, Theobroma cacao) form a new lineage of Marasmiaceae (2005) Mycologia, 97 (5), pp. 1012-1022. , 10.3852/mycologia.97.5.1012 16596953
dc.descriptionGriffith, G.W., Nicholson, J., Nenninger, A., Birch, R.N., Hedger, J.N., Witches' brooms and frosty pods: Two major pathogens of cacao (2003) New Zeal J Bot, 41 (3), pp. 423-435
dc.descriptionEvans, H.C., Cacao diseases - The trilogy revisited (2007) Phytopathology, 97 (12), pp. 1640-1643. , 10.1094/PHYTO-97-12-1640 18943725
dc.descriptionPereira, J.L., Ram, A., Figuereido, J.M., de Almeida, L.C., La primera aparición de la "escoba de bruja" en la principal área productora de cacao del Brasil (1989) Turrialba, 39 (7), pp. 459-461
dc.descriptionPereira, J.L., deAlmeida, L.C.C., Santos, S.M., Witches' broom disease of cocoa in Bahia: Attempts at eradication and containment (1996) Crop Protection, 15 (8), pp. 743-752. , 10.1016/S0261-2194(96)00049-X
dc.descriptionEvans, H.C., Pleomorphism in Crinipellis perniciosa, Causal Agent of Witches Broom Disease of Cocoa (1980) Trans Br Mycol Soc, 74, pp. 515-523. , (Jun)
dc.descriptionGriffith, G.W., Hedger, J.N., Dual culture of Crinipellis perniciosa and potato callus (1994) Eur J Plant Pathol, 100 (6), pp. 371-379. , 10.1007/BF01874805
dc.descriptionDelgado, J.C., Cook, A.A., Nuclear condition of basidia, basidiospores, and mycelium of Marasmius perniciosus (1976) Can J Bot, 54 (1-2), pp. 66-72. , 10.1139/b76-009
dc.descriptionRincones, J., Meinhardt, L.W., Vidal, B.C., Pereira, G.A., Electrophoretic karyotype analysis of Crinipellis perniciosa, the causal agent of witches' broom disease of Theobroma cacao (2003) Mycol Res, 107 (PART 4), pp. 452-458. , 10.1017/S0953756203007597 12825518
dc.descriptionRincones, J., Mazotti, G.D., Griffith, G.W., Pomela, A., Figueira, A., Leal Jr., G.A., Queiroz, M.V., Meinhardt, L.W., Genetic variability and chromosome-length polymorphisms of the witches' broom pathogen Crinipellis perniciosa from various plant hosts in South America (2006) Mycol Res, 110 (PART 7), pp. 821-832. , 10.1016/j.mycres.2006.05.002 16876701
dc.descriptionFormighieri, E.F., Tiburcio, R.A., Armas, E.D., Medrano, F.J., Shimo, H., Carels, N., Góes-Neto, A., Pereira, G.A.G., The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid (2008) Mycol Res, 112, pp. 1136-1152. , 10.1016/j.mycres.2008.04.014 18786820
dc.descriptionScarpari, L.M., Meinhardt, L.W., Mazzafera, P., Pomella, A.W., Schiavinato, M.A., Cascardo, J.C., Pereira, G.A., Biochemical changes during the development of witches' broom: The most important disease of cocoa in Brazil caused by Crinipellis perniciosa (2005) J Exp Bot, 56 (413), pp. 865-877. , 10.1093/jxb/eri079 15642708
dc.descriptionGesteira Ada, S., Micheli, F., Ferreira, C.F., Cascardo, J.C., Isolation and purification of functional total RNA from different organs of cacao tree during its interaction with the pathogen Crinipellis perniciosa (2003) Biotechniques, 35 (3), pp. 494-496. , 498-500 14513554
dc.descriptionPirovani, C.P., Carvalho, H.A., Machado, R.C., Gomes, D.S., Alvim, F.C., Pomella, A.W., Gramacho, K.P., Micheli, F., Protein extraction for proteome analysis from cacao leaves and meristems, organs infected by Moniliophthora perniciosa, the causal agent of the witches' broom disease (2008) Electrophoresis, 29 (11), pp. 2391-2401. , 10.1002/elps.200700743 18435495
dc.descriptionLima, J.O., dos Santos, J.K., Pereira, J.F., de Resende, M.L., de Araujo, E.F., de Queiroz, M.V., Development of a transformation system for Crinipellis perniciosa, the causal agent of witches' broom in cocoa plants (2003) Curr Genet, 42 (4), pp. 236-240. , 12589475
dc.descriptionFilho, D.F., Pungartnik, C., Cascardo, J.C., Brendel, M., Broken hyphae of the basidiomycete Crinipellis perniciosa allow quantitative assay of toxicity (2006) Curr Microbiol, 52 (5), pp. 407-412. , 10.1007/s00284-005-0405-3 16586019
dc.descriptionMeinhardt, L.W., Bellato, C.M., Rincones, J., Azevedo, R.A., Cascardo, J.C., Pereira, G.A., In vitro production of biotrophic-like cultures of Crinipellis perniciosa, the causal agent of witches' broom disease of Theobroma cacao (2006) Curr Microbiol, 52 (3), pp. 191-196. , 10.1007/s00284-005-0182-z 16502292
dc.descriptionGarcia, O., Macedo, J.A., Tiburcio, R., Zaparoli, G., Rincones, J., Bittencourt, L.M., Ceita, G.O., Cascardo, J.C., Characterization of necrosis and ethylene-inducing proteins (NEP) in the basidiomycete Moniliophthora perniciosa, the causal agent of witches' broom in Theobroma cacao (2007) Mycol Res, 111 (PART 4), pp. 443-455. , 10.1016/j.mycres.2007.01.017 17512713
dc.descriptionRincones, J., Scarpari, L.M., Carazzolle, M.F., Mondego, J.M.C., Formighieri, E.F., Barau, J.G., Costa, G.G.L., Pereira, G.A.G., Differential gene expression between the biotrophic-like and saprotrophic mycelia of the Witches' broom pathogen Moniliophthora perniciosa (2008) Mol Plant Microbe Interact, 21 (7), pp. 891-908. , 10.1094/MPMI-21-7-0891 18533830
dc.descriptionGesteira, A.S., Micheli, F., Carels, N., Da Silva, A.C., Gramacho, K.P., Schuster, I., Macedo, J.N., Cascardo, J.C., Comparative Analysis of Expressed Genes from Cacao Meristems Infected by Moniliophthora perniciosa (2007) Ann Bot (Lond), 100 (1), pp. 129-140. , 10.1093/aob/mcm092 17557832
dc.descriptionLeal, G.A., Albuquerque, P.S.B., Figueira, A., Genes differentially expressed in Theobroma cacao associated with resistance to witches' broom disease caused by Crinipellis perniciosa (2007) Mol Plant Pathol, 8 (3), pp. 279-292. , 10.1111/j.1364-3703.2007.00393.x
dc.descriptionMunch, S., Lingner, U., Floss, D.S., Ludwig, N., Sauer, N., Deising, H.B., The hemibiotrophic lifestyle of Colletotrichum species (2008) J Plant Physiol, 165 (1), pp. 41-51. , 10.1016/j.jplph.2007.06.008 17765357
dc.descriptionMeinhardt, L.W., Rincones, J., Bailey, B.A., Aime, M.C., Griffith, G.W., Zhang, D., Pereira, G.A., Moniliophthora perniciosa, the causal agent of witches' broom disease of cacao: What's new from this old foe? (2008) Mol Plant Pathol, 9 (5), pp. 577-588. , 10.1111/j.1364-3703.2008.00496.x 19018989
dc.descriptionJames, T.Y., Kauff, F., Schoch, C.L., Matheny, P.B., Hofstetter, V., Cox, C.J., Celio, G., Vilgalys, R., Reconstructing the early evolution of Fungi using a six-gene phylogeny (2006) Nature, 443 (7113), pp. 818-822. , 10.1038/nature05110 17051209
dc.descriptionBouck, J., Miller, W., Gorrell, J.H., Muzny, D., Gibbs, R.A., Analysis of the quality and utility of random shotgun sequencing at low redundancies (1998) Genome Res, 8 (10), pp. 1074-1084. , 310787 9799794
dc.descriptionBranscomb, E., Predki, P., On the high value of low standards (2002) J Bacteriol, 184 (23), pp. 6406-6409. , discussion 6409 135412 12426325 10.1128/JB.184.23.6406-6409.2002
dc.descriptionFraser, C.M., Eisen, J.A., Nelson, K.E., Paulsen, I.T., Salzberg, S.L., The value of complete microbial genome sequencing (you get what you pay for) (2002) J Bacteriol, 184 (23), pp. 6403-6405. , discusion 6405 135419 12426324 10.1128/JB.184.23.6403-6405.2002
dc.descriptionGardner, S.N., Lam, M.W., Smith, J.R., Torres, C.L., Slezak, T.R., Draft versus finished sequence data for DNA and protein diagnostic signature development (2005) Nucleic Acids Res, 33 (18), pp. 5838-5850. , 1266063 16243783 10.1093/nar/gki896
dc.descriptionTaudien, S., Ebersberger, I., Glockner, G., Platzer, M., Should the draft chimpanzee sequence be finished? (2006) Trends Genet, 22 (3), pp. 122-125. , 10.1016/j.tig.2005.12.007 16406850
dc.descriptionKirkness, E.F., Bafna, V., Halpern, A.L., Levy, S., Remington, K., Rusch, D.B., Delcher, A.L., Venter, J.C., The dog genome: Survey sequencing and comparative analysis (2003) Science, 301 (5641), pp. 1898-1903. , 10.1126/science.1086432 14512627
dc.descriptionGreen, P., 2× Genomes-does depth matter? (2007) Genome Res, 17 (11), pp. 1547-1549. , 10.1101/gr.7050807 17975171
dc.descriptionWoolfit, M., Rozpedowska, E., Piskur, J., Wolfe, K.H., Genome survey sequencing of the wine spoilage yeast Dekkera (Brettanomyces) bruxellensis (2007) Eukaryot Cell, 6 (4), pp. 721-733. , 1865652 17277171 10.1128/EC.00338-06
dc.descriptionLander, E.S., Waterman, M.S., Genomic mapping by fingerprinting random clones: A mathematical analysis (1988) Genomics, 2 (3), pp. 231-239. , 10.1016/0888-7543(88)90007-9 3294162
dc.descriptionWendl, M.C., Waterston, R.H., Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing (2002) Genome Res, 12 (12), pp. 1943-1949. , 187573 12466299 10.1101/gr.655102
dc.descriptionWendl, M.C., Yang, S.P., Gap statistics for whole genome shotgun DNA sequencing projects (2004) Bioinformatics, 20 (10), pp. 1527-1534. , 10.1093/bioinformatics/bth120 14962917
dc.descriptionParra, G., Bradnam, K., Korf, I., CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes (2007) Bioinformatics, 23 (9), pp. 1061-1067. , 10.1093/bioinformatics/btm071 17332020
dc.descriptionPhillippy, A.M., Schatz, M.C., Pop, M., Genome assembly forensics: Finding the elusive mis-assembly (2008) Genome Biol, 9 (3), pp. R55. , 2397507 18341692 10.1186/gb-2008-9-3-r55
dc.descriptionZhang, M., Gish, W., Improved spliced alignment from an information theoretic approach (2006) Bioinformatics, 22 (1), pp. 13-20. , 10.1093/bioinformatics/bti748 16267086
dc.descriptionStanke, M., Steinkamp, R., Waack, S., Morgenstern, B., AUGUSTUS: A web server for gene finding in eukaryotes (2004) Nucleic Acids Res, pp. W309-312. , (Web Server) 441517 15215400 10.1093/nar/gkh379
dc.descriptionKorf, I., Gene finding in novel genomes (2004) BMC Bioinformatics, 5, p. 59. , 421630 15144565 10.1186/1471-2105-5-59
dc.descriptionAllen, J.E., Majoros, W.H., Pertea, M., Salzberg, S.L., JIGSAW, GeneZilla, and GlimmerHMM: Puzzling out the features of human genes in the ENCODE regions (2006) Genome Biol, 7 (SUPPL.). , S9 10.1186/gb-2006-7-s1-s9
dc.descriptionEnright, A.J., van Dongen, S., Ouzounis, C.A., An efficient algorithm for large-scale detection of protein families (2002) Nucleic Acids Res, 30 (7), pp. 1575-1584. , 101833 11917018 10.1093/nar/30.7.1575
dc.descriptionEnright, A.J., Kunin, V., Ouzounis, C.A., Protein families and TRIBES in genome sequence space (2003) Nucleic Acids Res, 31 (15), pp. 4632-4638. , 169885 12888524 10.1093/nar/gkg495
dc.descriptionTekaia, F., Latge, J.P., Aspergillus fumigatus: Saprophyte or pathogen? (2005) Curr Opin Microbiol, 8 (4), pp. 385-392. , 10.1016/j.mib.2005.06.017 16019255
dc.descriptionKupfer, D.M., Reece, C.A., Clifton, S.W., Roe, B.A., Prade, R.A., Multicellular ascomycetous fungal genomes contain more than 8000 genes (1997) Fungal Genet Biol, 21 (3), pp. 364-372. , 10.1006/fgbi.1997.0982 9290249
dc.descriptionKoski, L.B., Gray, M.W., Lang, B.F., Burger, G., AutoFACT: An automatic functional annotation and classification tool (2005) BMC Bioinformatics, 6, p. 151. , 1182349 15960857 10.1186/1471-2105-6-151
dc.descriptionMarchler-Bauer, A., Anderson, J.B., Derbyshire, M.K., DeWeese-Scott, C., Gonzales, N.R., Gwadz, M., Hao, L.N., Bryant, S.H., CDD: A conserved domain database for interactive domain family analysis (2007) Nucleic Acids Res, 35, pp. D237-D240. , 1751546 17135202 10.1093/nar/gkl951
dc.descriptionKarp, P.D., Ouzounis, C.A., Moore-Kochlacs, C., Goldovsky, L., Kaipa, P., Ahren, D., Tsoka, S., Lopez-Bigas, N., Expansion of the BioCyc collection of pathway/genome databases to 160 genomes (2005) Nucleic Acids Res, 33 (19), pp. 6083-6089. , 1266070 16246909 10.1093/nar/gki892
dc.descriptionGonzalez, F.J., Nebert, D.W., Evolution of the P450 gene superfamily: Animal-plant 'warfare', molecular drive and human genetic differences in drug oxidation (1990) Trends Genet, 6 (6), pp. 182-186. , 10.1016/0168-9525(90)90174-5 2196721
dc.descriptionSaier Jr., M.H., Tran, C.V., Barabote, R.D., TCDB: The Transporter Classification Database for membrane transport protein analyses and information (2006) Nucleic Acids Res, pp. D181-186. , (Database) 1334385 16381841 10.1093/nar/gkj001
dc.descriptionStergiopoulos, I., Zwiers, L.H., De Waard, M.A., The ABC transporter MgAtr4 is a virulence factor of Mycosphaerella graminicola that affects colonization of substomatal cavities in wheat leaves (2003) Mol Plant Microbe Interact, 16 (8), pp. 689-698. , 10.1094/MPMI.2003.16.8.689 12906113
dc.descriptionRogers, B., Decottignies, A., Kolaczkowski, M., Carvajal, E., Balzi, E., Goffeau, A., The pleitropic drug ABC transporters from Saccharomyces cerevisiae (2001) J Mol Microbiol Biotechnol, 3 (2), pp. 207-214. , 11321575
dc.descriptionBenito, B., Garciadeblas, B., Rodriguez-Navarro, A., Potassium- or sodium-efflux ATPase, a key enzyme in the evolution of fungi (2002) Microbiology, 148 (PART 4), pp. 933-941. , 11932440
dc.descriptionApel, K., Hirt, H., Reactive oxygen species: Metabolism, oxidative stress, and signal transduction (2004) Annu Rev Plant Biol, 55, pp. 373-399. , 10.1146/annurev.arplant.55.031903.141701 15377225
dc.descriptionAble, A.J., Role of reactive oxygen species in the response of barley to necrotrophic pathogens (2003) Protoplasma, 221 (1-2), pp. 137-143. , 10.1007/s00709-002-0064-1 12768351
dc.descriptionGovrin, E.M., Levine, A., The hypersensitive response facilitates plant infection by the necrotrophic pathogen Botrytis cinerea (2000) Curr Biol, 10 (13), pp. 751-757. , 10.1016/S0960-9822(00)00560-1 10898976
dc.descriptionRio, M.C.S., Oliveira, B.V., Thomazella, D.P., Fracassi da Silva, J.A., Pereira, G.A.G., Production of calcium oxalate crystals by the basidiomycete Moniliophthora perniciosa, the causal agent of the Witches' Broom Disease of cacao (2008) Curr Microbiol, 56 (4), pp. 363-370. , 10.1007/s00284-007-9091-7 18172716
dc.descriptionCeita, G.O., Macêdo, J.N.A., Santos, T.B., Alemanno, L., Gesteira, A.S., Micheli, F., Mariano, A.C., Cascardo, J.M., Involvement of calcium oxalate degradation during programmed cell death in Theobroma cacao tissues triggered by the hemibiotrophic fungus Moniliophthora perniciosa (2007) Plant Sci, 173 (2), pp. 106-117. , 10.1016/j.plantsci.2007.04.006
dc.descriptionGarcia-Brugger, A., Lamotte, O., Vandelle, E., Bourque, S., Lecourieux, D., Poinssot, B., Wendehenne, D., Pugin, A., Early signaling events induced by elicitors of plant defenses (2006) Mol Plant Microbe Interact, 19 (7), pp. 711-724. , 10.1094/MPMI-19-0711 16838784
dc.descriptionKim, K.S., Min, J.Y., Dickman, M.B., Oxalic Acid Is an Elicitor of Plant Programmed Cell Death during Sclerotinia sclerotiorum Disease Development (2008) Mol Plant Microbe Interact, 21 (5), pp. 605-612. , 10.1094/MPMI-21-5-0605 18393620
dc.descriptionBolker, M., Ustilago maydis - A valuable model system for the study of fungal dimorphism and virulence (2001) Microbiology, 147 (PART 6), pp. 1395-1401. , 11390671
dc.descriptionde Arruda, M.C.C.M.R., Ferreira, M.A.S.V., Felipe, M.S.S., Comparison of Crinipellis perniciosa isolates from Brazil by ERIC repetitive element sequence-based PCR genomic fingerprinting (2003) Plant Pathology, 52 (2), pp. 236-244. , 10.1046/j.1365-3059.2003.00819.x
dc.descriptionAndebrhan, T., Figueira, A., Yamada, M.M., Cascardo, J., Furtek, D.B., Molecular fingerprinting suggests two primary outbreaks of witches' broom disease (Crinipellis perniciosa) of Theobroma cacao in Bahia, Brazil (1999) Eur J Plant Pathol, 105 (2), pp. 167-175. , 10.1023/A:1008716000479
dc.descriptionBartley, B.G.D., Cacao (Theobroma cacao L.) (1986) Breeding for Durable Resistance in Perennial Crops. FAO Plant Production and Protection Paper, 70, pp. 25-42
dc.descriptionLarrondo, L.F., Canessa, P., Vicuna, R., Stewart, P., Wymelenberg, A., Cullen, D., Structure and transcriptional impact of divergent repetitive elements inserted within Phanerochaete chrysosporium strain RP-78 genes (2007) Mol Genet Genomics, 277 (1), pp. 43-55. , 10.1007/s00438-006-0167-z 17033809
dc.descriptionPoulter, R.T., Goodwin, T.J., DIRS-1 and the other tyrosine recombinase retrotransposons (2005) Cytogenet Genome Res, 110 (1-4), pp. 575-588. , 10.1159/000084991 16093711
dc.descriptionDeMarco, R., Venancio, T.M., Verjovski-Almeida, S., SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamily (2006) BMC Evol Biol, 6, p. 89. , 1636069 17090310 10.1186/1471-2148-6-89
dc.descriptionRep, M., Does, H.C., Cornelissen, B.J., Drifter, a novel, low copy hATlike transposon in Fusarium oxysporum is activated during starvation (2005) Fungal Genet Biol, 42 (6), pp. 546-553. , 10.1016/j.fgb.2005.03.007 15869889
dc.descriptionKempken, F., Kuck, U., Restless, an active Ac-like transposon from the fungus Tolypocladium inflatum: Structure, expression, and alternative RNA splicing (1996) Mol Cell Biol, 16 (11), pp. 6563-6572. , 231658 8887685
dc.descriptionMonroy, F., Sheppard, D.C., Taf1: A class II transposon of Aspergillus fumigatus (2005) Fungal Genet Biol, 42 (7), pp. 638-645. , 10.1016/j.fgb.2005.04.003 15896988
dc.descriptionZhang, X., Feschotte, C., Zhang, Q., Jiang, N., Eggleston, W.B., Wessler, S.R., P instability factor: An active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases (2001) Proc Natl Acad Sci USA, 98 (22), pp. 12572-12577. , 60095 11675493 10.1073/pnas.211442198
dc.descriptionRobert-Seilaniantz, A., Navarro, L., Bari, R., Jones, J.D., Pathological hormone imbalances (2007) Curr Opin Plant Biol, 10 (4), pp. 372-379. , 10.1016/j.pbi.2007.06.003 17646123
dc.descriptionSun, S.-K., Snyder, W.C., The bakanae disease of the rice plant (1981) Fusarium: Diseases, Biology and Taxonomy, pp. 104-113. , The Pennsylvania State University Press Nelson TAT PE, Cook RJ
dc.descriptionRademacher, W., Graebe, J.E., Gibberellin A4 produced by Sphaceloma manihoticola, the cause of the superelongation disease of cassava (Manihot esculenta) (1979) Biochem Biophys Res Commun, 91 (1), pp. 35-40. , 10.1016/0006-291X(79)90579-5 518631
dc.descriptionTudzynski, B., Kawaide, H., Kamiya, Y., Gibberellin biosynthesis in Gibberella fujikuroi: Cloning and characterization of the copalyl diphosphate synthase gene (1998) Curr Genet, 34 (3), pp. 234-240. , 10.1007/s002940050392 9745028
dc.descriptionBastos, C.N., Andebrhan, T., Presença de giberelina em basidiosporos de Crinipelis perniciosa (Stahel) Singer (1981) Fitopatologia Brasileira, 6, pp. 417-423
dc.descriptionKilaru, A., Bailey, B.A., Hasenstein, K.H., Moniliophthora perniciosa produces hormones and alters endogenous auxin and salicylic acid in infected cocoa leaves (2007) FEMS Microbiol Lett, 274 (2), pp. 238-244. , 10.1111/j.1574-6968.2007.00837.x 17610511
dc.descriptionWolf, F.T., The Production of Indole Acetic Acid by Ustilago-Zeae, and Its Possible Significance in Tumor Formation (1952) Proc Natl Acad Sci USA, 38 (2), pp. 106-111. , 1063512 16589061 10.1073/pnas.38.2.106
dc.descriptionMaor, R., Haskin, S., Levi-Kedmi, H., Sharon, A., In planta production of indole-3-acetic acid by Colletotrichum gloeosporioides f. sp. aeschynomene aeschynomene (2004) Appl Environ Microbiol, 70 (3), pp. 1852-1854. , 368304 15006816 10.1128/AEM.70.3.1852-1854.2004
dc.descriptionPerley, J.E., Stowe, B.B., On the ability of Taphrina deformans to produce indoleacetic acid from tryptophan by way of tryptamine (1966) Plant Physiol, 41 (2), pp. 234-237. , 1086325 5908633 10.1104/pp.41.2.234
dc.descriptionPrusty, R., Grisafi, P., Fink, G.R., The plant hormone indoleacetic acid induces invasive growth in Saccharomyces cerevisiae (2004) Proc Natl Acad Sci USA, 101 (12), pp. 4153-4157. , 384710 15010530 10.1073/pnas.0400659101
dc.descriptionRoss, J.J., O'Neill, D.P., Smith, J.J., Kerckhoffs, L.H., Elliott, R.C., Evidence that auxin promotes gibberellin A1 biosynthesis in pea (2000) Plant J, 21 (6), pp. 547-552. , 10.1046/j.1365-313x.2000.00702.x 10758505
dc.descriptionPierik, R., Tholen, D., Poorter, H., Visser, E.J., Voesenek, L.A., The Janus face of ethylene: Growth inhibition and stimulation (2006) Trends Plant Sci, 11 (4), pp. 176-183. , 10.1016/j.tplants.2006.02.006 16531097
dc.descriptionSwarup, R., Parry, G., Graham, N., Allen, T., Bennett, M., Auxin cross-talk: Integration of signalling pathways to control plant development (2002) Plant Mol Biol, 49 (3-4), pp. 411-426. , 12036264
dc.descriptionSteffens, B., Sauter, M., Epidermal cell death in rice is regulated by ethylene, gibberellin, and abscisic acid (2005) Plant Physiol, 139 (2), pp. 713-721. , 1255990 16169967 10.1104/pp.105.064469
dc.descriptionPierik, R., Cuppens, M.L., Voesenek, L.A., Visser, E.J., Interactions between ethylene and gibberellins in phytochrome-mediated shade avoidance responses in tobacco (2004) Plant Physiol, 136 (2), pp. 2928-2936. , 523355 15448197 10.1104/pp.104.045120
dc.descriptionMaor, R., Shirasu, K., The arms race continues: Battle strategies between plants and fungal pathogens (2005) Curr Opin Microbiol, 8 (4), pp. 399-404. , 10.1016/j.mib.2005.06.008 15996507
dc.descriptionDodds, P.N., Lawrence, G.J., Catanzariti, A.M., Ayliffe, M.A., Ellis, J.G., The Melampsora lini AvrL567 avirulence genes are expressed in haustoria and their products are recognized inside plant cells (2004) Plant Cell, 16 (3), pp. 755-768. , 385286 14973158 10.1105/tpc.020040
dc.descriptionKemen, E., Kemen, A.C., Rafiqi, M., Hempel, U., Mendgen, K., Hahn, M., Voegele, R.T., Identification of a protein from rust fungi transferred from haustoria into infected plant cells (2005) Mol Plant Microbe Interact, 18 (11), pp. 1130-1139. , 10.1094/MPMI-18-1130 16353548
dc.descriptionRooney, H.C., Van't Klooster, J.W., Hoorn, R.A., Joosten, M.H., Jones, J.D., de Wit, P.J., Cladosporium Avr2 inhibits tomato Rcr3 protease required for Cf-2-dependent disease resistance (2005) Science, 308 (5729), pp. 1783-1786. , 10.1126/science.1111404 15845874
dc.descriptionKamper, J., Kahmann, R., Bolker, M., Ma, L.J., Brefort, T., Saville, B.J., Banuett, F., Birren, B.W., Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis (2006) Nature, 444 (7115), pp. 97-101. , 10.1038/nature05248 17080091
dc.descriptionRep, M., Small proteins of plant-pathogenic fungi secreted during host colonization (2005) FEMS Microbiol Lett, 253 (1), pp. 19-27. , 10.1016/j.femsle.2005.09.014 16216445
dc.descriptionZaparoli, G., Garcia, O., Medrano, F.J., Tiburcio, R., Costa, G.L., Pereira, G.A.G., Identification of a second family of genes in Moniliophthora perniciosa, the causal agent of Witches' Broom disease in cacao, encoding necrosis inducing proteins similar to cerato platanins (2008) Mycol Res, , 18796332
dc.descriptionNonaka, T., Dohmae, N., Hashimoto, Y., Takio, K., Amino acid sequences of metalloendopeptidases specific for acyl-lysine bonds from Grifola frondosa and Pleurotus ostreatus fruiting bodies (1997) J Biol Chem, 272 (48), pp. 30032-30039. , 10.1074/jbc.272.48.30032 9374478
dc.descriptionSepcic, K., Berne, S., Potrich, C., Turk, T., Macek, P., Menestrina, G., Interaction of ostreolysin, a cytolytic protein from the edible mushroom Pleurotus ostreatus, with lipid membranes and modulation by lysophospholipids (2003) Eur J Biochem, 270 (6), pp. 1199-1210. , 10.1046/j.1432-1033.2003.03480.x 12631278
dc.descriptionWymelenberg, A., Minges, P., Sabat, G., Martinez, D., Rajangam, A.S., Teeri, T.T., Gaskell, J., Cullen, D., The Phanerochaete chrysosporium secretome: Database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium (2005) J Biotechnol, 118 (1), pp. 17-34. , 10.1016/j.jbiotec.2005.03.010 15888348
dc.descriptionGarcia-Conesa, M.T., Kro on, P.A., Ralph, J., Mellon, F.A., Colquhoun, I.J., Saulnier, L., Thibault, J.F., Williamson, G., A cinnamoyl esterase from Aspergillus niger can break plant cell wall cross-links without release of free diferulic acids (1999) Eur J Biochem, 266 (2), pp. 644-652. , 10.1046/j.1432-1327.1999.00910.x 10561608
dc.descriptionvan Loon, L.C., Rep, M., Pieterse, C.M., Significance of inducible defense-related proteins in infected plants (2006) Annu Rev Phytopathol, 44, pp. 135-162. , 10.1146/annurev.phyto.44.070505.143425 16602946
dc.descriptionBroekaert, W.F., Terras, F.R.G., Induced and preformed antimicrobial proteins (2000) Mechanisms of Resistance to Plant Diseases, pp. 371-477. , BPA C Dordrecht: Kluwer Slusarenko AJFR, Van Loon LC
dc.descriptionHu, X., Reddy, A.S., Nucleotide sequence of a cDNA clone encoding a thaumatin-like protein from Arabidopsis (1995) Plant Physiol, 107 (1), pp. 305-306. , 161222 7870835 10.1104/pp.107.1.305
dc.descriptionPunja, Z., Transgenic carrots expressing a thaumatin-like protein display enhanced resistance to several fungal pathogens (2005) Can J Plant Pathol, 27, pp. 291-296
dc.descriptionFierens, E., Rombouts, S., Gebruers, K., Goesaert, H., Brijs, K., Beaugrand, J., Volckaert, G., Delcour, J.A., TLXI, a novel type of xylanase inhibitor from wheat (Triticum aestivum) belonging to the thaumatin family (2007) Biochem J, 403 (3), pp. 583-591. , 1876379 17269932 10.1042/BJ20061291
dc.descriptionMiosga, T., Schaaff-Gerstenschlager, I., Chalwatzis, N., Baur, A., Boles, E., Fournier, C., Schmitt, S., Zimmermann, F.K., Sequence analysis of a 33.1 kb fragment from the left arm of Saccharomyces cerevisiae chromosome X, including putative proteins with leucine zippers, a fungal Zn(II)2-Cys6 binuclear cluster domain and a putative alpha 2-SCB-alpha 2 binding site (1995) Yeast, 11 (7), pp. 681-689. , 10.1002/yea.320110709 7483841
dc.descriptionSakamoto, Y., Watanabe, H., Nagai, M., Nakade, K., Takahashi, M., Sato, T., Lentinula edodes tlg1 encodes a thaumatin-like protein that is involved in lentinan degradation and fruiting body senescence (2006) Plant Physiol, 141 (2), pp. 793-801. , 1475445 16648221 10.1104/pp.106.076679
dc.descriptionChaves, F.C., Gianfagna, T.J., Necrotrophic phase of Monihophthora perniciosa causes salicylic acid accumulation in infected stems of cacao (2006) Physiol Mol Plant Pathol, 69 (1-3), pp. 104-108. , 10.1016/j.pmpp.2007.02.003
dc.descriptionAro, N., Pakula, T., Penttila, M., Transcriptional regulation of plant cell wall degradation by filamentous fungi (2005) FEMS Microbiol Rev, 29 (4), pp. 719-739. , 10.1016/j.femsre.2004.11.006 16102600
dc.descriptionCuomo, C.A., Guldener, U., Xu, J.R., Trail, F., Turgeon, B.G., Di Pietro, A., Walton, J.D., Kistler, H.C., The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization (2007) Science, 317 (5843), pp. 1400-1402. , 10.1126/science.1143708 17823352
dc.descriptionMillar, A.H., Day, D.A., Nitric oxide inhibits the cytochrome oxidase but not the alternative oxidase of plant mitochondria (1996) FEBS Lett, 398 (2-3), pp. 155-158. , 10.1016/S0014-5793(96)01230-6 8977097
dc.descriptionJuarez, O., Guerra, G., Martinez, F., Pardo, J.P., The mitochondrial respiratory chain of Ustilago maydis (2004) Biochim Biophys Acta, 1658 (3), pp. 244-251. , 10.1016/j.bbabio.2004.06.005 15450962
dc.descriptionJuarez, O., Guerra, G., Velazquez, I., Flores-Herrera, O., Rivera-Perez, R.E., Pardo, J.P., The physiologic role of alternative oxidase in Ustilago maydis (2006) Febs J, 273 (20), pp. 4603-4615. , 10.1111/j.1742-4658.2006.05463.x 16965537
dc.descriptionJoseph-Horne, T., Hollomon, D.W., Wood, P.M., Fungal respiration: A fusion of standard and alternative components (2001) Biochim Biophys Acta, 1504 (2-3), pp. 179-195. , 11245784
dc.descriptionIdnurm, A., Howlett, B.J., Isocitrate lyase is essential for pathogenicity of the fungus Leptosphaeria maculans to canola (Brassica napus) (2002) Eukaryot Cell, 1 (5), pp. 719-724. , 126752 12455691 10.1128/EC.1.5.719-724.2002
dc.descriptionSakai, S., Nishide, T., Munir, E., Baba, K., Inui, H., Nakano, Y., Hattori, T., Shimada, M., Subcellular localization of glyoxylate cycle key enzymes involved in oxalate biosynthesis of wood-destroying basidiomycete Fomitopsis palustris grown on glucose (2006) Microbiology, 152 (PART 6), pp. 1857-1866. , 10.1099/mic.0.28702-0 16735748
dc.descriptionWang, Z.Y., Thornton, C.R., Kershaw, M.J., Debao, L., Talbot, N.J., The glyoxylate cycle is required for temporal regulation of virulence by the plant pathogenic fungus Magnaporthe grisea (2003) Mol Microbiol, 47 (6), pp. 1601-1612. , 10.1046/j.1365-2958.2003.03412.x 12622815
dc.descriptionSegers, G., Bradshaw, N., Archer, D., Blissett, K., Oliver, R.P., Alcohol oxidase is a novel pathogenicity factor for Cladosporium fulvum, but aldehyde dehydrogenase is dispensable (2001) Mol Plant Microbe Interact, 14 (3), pp. 367-377. , 10.1094/MPMI.2001.14.3.367 11277434
dc.descriptionDaniel, G., Volc, J., Filonova, L., Plihal, O., Kubatova, E., Halada, P., Characteristics of Gloeophyllum trabeum Alcohol Oxidase, an Extracellular Source of H2O2 in Brown Rot Decay of Wood (2007) Appl Environ Microbiol, 73 (19), pp. 6241-6253. , 2075019 17660304 10.1128/AEM.00977-07
dc.descriptionNakagawa, T., Miyaji, T., Yurimoto, H., Sakai, Y., Kato, N., Tomizuka, N., A methylotrophic pathway participates in pectin utilization by Candida boidinii (2000) Appl Environ Microbiol, 66 (10), pp. 4253-4257. , 92293 11010867 10.1128/AEM.66.10.4253-4257.2000
dc.descriptionFall, R., Benson, A.A., Leaf methanol - The simplest natural product from plants (1996) Trends Plant Sci, 1 (9), pp. 296-301
dc.descriptionAbanda-Nkpwatt, D., Musch, M., Tschiersch, J., Boettner, M., Schwab, W., Molecular interaction between Methylobacterium extorquens and seedlings: Growth promotion, methanol consumption, and localization of the methanol emission site (2006) J Exp Bot, 57 (15), pp. 4025-4032. , 10.1093/jxb/erl173 17043084
dc.descriptionWei, Y., Shen, W., Dauk, M., Wang, F., Selvaraj, G., Zou, J., Targeted gene disruption of glycerol-3-phosphate dehydrogenase in Colletotrichum gloeosporioides reveals evidence that glycerol is a significant transferred nutrient from host plant to fungal pathogen (2004) J Biol Chem, 279 (1), pp. 429-435. , 10.1074/jbc.M308363200 14563847
dc.descriptionSantos, R.X., Melo, S.C., Cascardo, J.C., Brendel, M., Pungartnik, C., Carbon source-dependent variation of acquired mutagen resistance of Moniliophthora perniciosa: Similarities in natural and artificial systems (2008) Fungal Genet Biol, , 18378474
dc.descriptionNakayama, A., Park, S., Zheng-Jun, X., Nakajima, M., Yamaguchi, I., Immunohistochemistry of active gibberellins and gibberellin-inducible alpha-amylase in developing seeds of morning glory (2002) Plant Physiol, 129 (3), pp. 1045-1053. , 166499 12114559 10.1104/pp.010921
dc.descriptionPellier, A.L., Lauge, R., Veneault-Fourrey, C., Langin, T., CLNR1, the AREA/NIT2-like global nitrogen regulator of the plant fungal pathogen Colletotrichum lindemuthianum is required for the infection cycle (2003) Mol Microbiol, 48 (3), pp. 639-655. , 10.1046/j.1365-2958.2003.03451.x 12694611
dc.descriptionDivon, H.H., Fluhr, R., Nutrition acquisition strategies during fungal infection of plants (2007) FEMS Microbiol Lett, 266 (1), pp. 65-74. , 10.1111/j.1574-6968.2006.00504.x 17083369
dc.descriptionMarzluf, G.A., Genetic regulation of nitrogen metabolism in the fungi (1997) Microbiol Mol Biol Rev, 61, pp. 17-32. , 32 232598 9106362
dc.descriptionLau, G., Hamer, J.E., Regulatory genes controlling MPG1 expression and pathogenicity in the rice blast fungus Magnaporthe grisea (1996) Plant Cell, 8 (5), pp. 771-781. , 161136 12239399 10.1105/tpc.8.5.771
dc.descriptionEwing, B., Hillier, L., Wendl, M.C., Green, P., Base-calling of automated sequencer traces using phred. I. Accuracy assessment (1998) Genome Res, 8 (3), pp. 175-185. , 9521921
dc.descriptionChou, H.H., Holmes, M.H., DNA sequence quality trimming and vector removal (2001) Bioinformatics, 17 (12), pp. 1093-1104. , 10.1093/bioinformatics/17.12.1093 11751217
dc.descriptionUsuka, J., Zhu, W., Brendel, V., Optimal spliced alignment of homologous cDNA to a genomic DNA template (2000) Bioinformatics, 16 (3), pp. 203-211. , 10.1093/bioinformatics/16.3.203 10869013
dc.descriptionGremme, G., Brendel, V., Sparks, M.E., Kurtz, S., Engineering a software tool for gene structure prediction in higher organisms (2005) Inform Software Technol, 47 (15), pp. 965-978. , 10.1016/j.infsof.2005.09.005
dc.descriptionLowe, T.M., Eddy, S.R., tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence (1997) Nucleic Acids Res, 25 (5), pp. 955-964. , 146525 9023104 10.1093/nar/25.5.955
dc.descriptionKarp, P.D., Paley, S., Romero, P., The Pathway Tools software (2002) Bioinformatics, 18 (SUPPL. 1), pp. S225-S232. , 12169551
dc.descriptionNielsen, H., Engelbrecht, J., Brunak, S., von Heijne, G., Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites (1997) Protein Eng, 10 (1), pp. 1-6. , 10.1093/protein/10.1.1 9051728
dc.descriptionCollart, M.A., Oliviero, S., Preparation of yeast RNA by extraction with hot acidic phenol (2006) Current Protocols in Molecular Biology, , New Jersey: John Wiley & Sons, Inc Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Hoboken KS
dc.languageen
dc.publisher
dc.relationBMC Genomics
dc.rightsaberto
dc.sourceScopus
dc.titleA Genome Survey Of Moniliophthora Perniciosa Gives New Insights Into Witches' Broom Disease Of Cacao
dc.typeArtículos de revistas


Este ítem pertenece a la siguiente institución