Signal Transduction-related Responses To Phytohormones And Environmental Challenges In Sugarcane

dc.creatorRocha F.R.
dc.creatorPapini-Terzi F.S.
dc.creatorNishiyama Jr. M.Y.
dc.creatorVencio R.Z.N.
dc.creatorVicentini R.
dc.creatorDuarte R.D.C.
dc.creatorde Rosa Jr. V.E.
dc.creatorVinagre F.
dc.creatorBarsalobres C.
dc.creatorMedeiros A.H.
dc.creatorRodrigues F.A.
dc.creatorUlian E.C.
dc.creatorZingaretti S.M.
dc.creatorGalbiatti J.A.
dc.creatorAlmeida R.S.
dc.creatorFigueira A.V.O.
dc.creatorHemerly A.S.
dc.creatorSilva-Filho M.C.
dc.creatorMenossi M.
dc.creatorSouza G.M.
dc.date2007
dc.date2015-06-30T18:50:54Z
dc.date2015-11-26T14:38:25Z
dc.date2015-06-30T18:50:54Z
dc.date2015-11-26T14:38:25Z
dc.date.accessioned2018-03-28T21:43:27Z
dc.date.available2018-03-28T21:43:27Z
dc.identifier
dc.identifierBmc Genomics. , v. 8, n. , p. - , 2007.
dc.identifier14712164
dc.identifier10.1186/1471-2164-8-71
dc.identifierhttp://www.scopus.com/inward/record.url?eid=2-s2.0-34247186509&partnerID=40&md5=5c1229e635c82f78aa0648ba134da3cc
dc.identifierhttp://www.repositorio.unicamp.br/handle/REPOSIP/105061
dc.identifierhttp://repositorio.unicamp.br/jspui/handle/REPOSIP/105061
dc.identifier2-s2.0-34247186509
dc.identifier.urihttp://repositorioslatinoamericanos.uchile.cl/handle/2250/1249569
dc.descriptionBackground: Sugarcane is an increasingly economically and environmentally important C4 grass, used for the production of sugar and bioethanol, a low-carbon emission fuel. Sugarcane originated from crosses of Saccharum species and is noted for its unique capacity to accumulate high amounts of sucrose in its stems. Environmental stresses limit enormously sugarcane productivity worldwide. To investigate transcriptome changes in response to environmental inputs that alter yield we used cDNA microarrays to profile expression of 1,545 genes in plants submitted to drought, phosphate starvation, herbivory and N2-fixing endophytic bacteria. We also investigated the response to phytohormones (abscisic acid and methyl jasmonate). The arrayed elements correspond mostly to genes involved in signal transduction, hormone biosynthesis, transcription factors, novel genes and genes corresponding to unknown proteins. Results: Adopting an outliers searching method 179 genes with strikingly different expression levels were identified as differentially expressed in at least one of the treatments analysed. Self Organizing Maps were used to cluster the expression profiles of 695 genes that showed a highly correlated expression pattern among replicates. The expression data for 22 genes was evaluated for 36 experimental data points by quantitative RT-PCR indicating a validation rate of 80.5% using three biological experimental replicates. The SUCAST Database was created that provides public access to the data described in this work, linked to tissue expression profiling and the SUCAST gene category and sequence analysis. The SUCAST database also includes a categorization of the sugarcane kinome based on a phylogenetic grouping that included 182 undefined kinases. Conclusion: An extensive study on the sugarcane tran scriptome was performed. Sugarcane genes responsive to phytohormones and to challenges sugarcane commonly deals with in the field were identified. Additionally, the protein kinases were annotated based on a phylogenetic approach. The experimental design and statistical analysis applied proved robust to unravel genes associated with a diverse array of conditions attributing novel functions to previously unknown or undefined genes. The data consolidated in the SUCAST database resource can guide further studies and be useful for the development of improved sugarcane varieties. © 2007 Rocha et al; licensee BioMed Central Ltd.
dc.description8
dc.description
dc.description
dc.description
dc.descriptionBray, E.A., Bailey-Serres, J., Weretilnyk, E., Responses to abiotic stresses (2000) Biochemistry & Molecular Biology of Plants, pp. 1158-1203. , Rockyville, Maryland: American Society of Plant Physiologists Buchanan B, Gruissem W, Jones R
dc.descriptionSchenk, P.M., Kazan, K., Wilson, I., Anderson, J.P., Richmond, T., Somerville, S.C., Manners, J.M., Coordinated plant defense responses in Arabidopsis revealed by microarray analysis (2000) Proc Natl Acad Sci USA, 97, pp. 11655-11660. , 17256 11027363 10.1073/pnas.97.21.11655
dc.descriptionKawasaki, S., Borchert, C., Deyholos, M., Wang, H., Brazille, S., Kawai, K., Galbraith, D., Bohnert, H.J., Gene expression profiles during the initial phase of salt stress in rice (2001) Plant Cell, 13, pp. 889-905. , 135538 11283343 10.1105/tpc.13.4.889
dc.descriptionOono, Y., Seki, M., Nanjo, T., Narusaka, M., Fujita, M., Satoh, R., Satou, M., Shinozaki, K., Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca 7,000 full-length cDNA microarray (2003) Plant J, 34, pp. 868-887. , 10.1046/j.1365-313X.2003.01774.x 12795706
dc.descriptionOono, Y., Seki, M., Satou, M., Iida, K., Akiyama, K., Sakurai, T., Fujita, M., Shinozaki, K., Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays (2006) Funct Integr Genomics, 4, pp. 1-23
dc.descriptionNogueira, F.T., De Rosa Jr., V.E., Menossi, M., Ulian, E.C., Arruda, P., RNA expression profiles and data mining of sugarcane response to low temperature (2003) Plant Physiol, 132, pp. 1811-1824. , 181268 12913139 10.1104/pp.102.017483
dc.descriptionDe Rosa Jr., V.E., Nogueira, F.T.S., Menossi, M., Ulian, E.C., Arruda, P., Identification of methyl jasmonate-responsive genes in sugarcane using cDNA arrays (2005) Braz J Plant Physiol, 17, pp. 173-180
dc.descriptionKates, R.W., Parris, T.M., Long-term trends and a sustainability transition (2003) Proc Natl Acad Sci USA, 100, pp. 8062-8067. , 166182 12829798 10.1073/pnas.1231331100
dc.descriptionRiera, M., Valon, C., Fenzi, F., Giraudat, J., Leung, J., The genetics of adaptive responses to drought stress: Abscisic acid-dependent and abscisic acid-independent signalling components (2005) Physiologia Plantarum, 123, pp. 111-119. , 10.1111/j.1399-3054.2005.00469.x
dc.descriptionKochian, L.V., Molecular physiology of mineral nutrient acquisition, transport and utilization (2000) Biochemistry and Molecular Biology of Plants, pp. 1204-1249. , Rockyville, Maryland: American Society of Plant Physiologists Buchanan B, Gruissem W, Jones R
dc.descriptionRaghothama, K.G., Phosphate acquisition (1999) Annu Rev Plant Physiol Plant Mol Biol, 50, pp. 665-693. , 10.1146/annurev.arplant.50.1.665 15012223
dc.descriptionRaghothama, K.G., Phosphate transport and signaling (2000) Curr Opin Plant Biol, 3, pp. 182-187. , 10837272
dc.descriptionSchachtman, D.P., Reid, R.J., Ayling, S.M., Phosphorus Uptake by Plants: From soil to Cell (1998) Plant Physiol, 116, pp. 447-453. , 1539172 9490752 10.1104/pp.116.2.447
dc.descriptionBraga, D.P.V., Arrigoni, E.D.B., Silva-Filho, M.C., Ulian, E.C., Expression of the Cry1Ab protein in genetically modified sugarcane for the control of Diatraea saccharalis (Lepidoptera: Crambidae) (2003) Journal of New Seeds, 5, pp. 209-222. , 10.1300/J153v05n02_07
dc.descriptionJames, E.K., Olivares, F.L., Infection and Colonization of Sugar Cane and Other Graminaceous Plants by Endophytic Diazotrophs (1998) Critical Reviews in Plant Sciences, 17, pp. 77-119. , 10.1016/S0735-2689(98)00357-8
dc.descriptionReinhold-Hurek, B., Hurek, T., Life in grasses: Diazotrophic endophytes (1998) Trends Microbiol, 6, pp. 139-144. , 10.1016/S0966-842X(98)01229-3 9587190
dc.descriptionSevilla, M., Burris, R.H., Gunapala, N., Kennedy, C., Comparison of benefit to Sugar Cane plant growth an 15N2 incorporation following inoculation of sterile plants with Acetobacter diazotrophicus wild-type and Nif- mutant strains (2001) Mol Plant-Microbe Interact, 14, pp. 358-366. , 11277433
dc.descriptionOlivares, F.L., James, E.K., Baldani, J.I., Döbereiner, J., Infection of mottled stripe disease-susceptible and resistant sugarcane varieties by the endophytic diazotrophs Herbaspirillum (1997) New Phytol, 135, pp. 723-727. , 10.1046/j.1469-8137.1997.00684.x
dc.descriptionHimmelbach, A., Yang, Y., Grill, E., Relay and control of abscisic acid signaling (2003) Curr Opin Plant Biol, 6, pp. 470-479. , 10.1016/S1369-5266(03)00090-6 12972048
dc.descriptionSeki, M., Ishida, J., Narusaka, M., Fujita, M., Nanjo, T., Umezawa, T., Kamiya, A., Shinozaki, K., Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray (2002) Funct Integr Genomics, 2, pp. 282-291. , 10.1007/s10142-002-0070-6 12444421
dc.descriptionPetersen, M., Brodersen, P., Naested, H., Andreasson, E., Lindhart, U., Johansen, B., Nielsen, H.B., Mundy, J., Arabidopsis map kinase 4 negatively regulates systemic acquired resistance (2000) Cell, 103, pp. 1111-1120. , 10.1016/S0092-8674(00)00213-0 11163186
dc.descriptionvan der Fits, L., Memelink, J., ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism (2000) Science, 289, pp. 295-297. , 10.1126/science.289.5477.295 10894776
dc.descriptionDevoto, A., Nieto-Rostro, M., Xie, D., Ellis, C., Harmston, R., Patrick, E., Davis, J., Turner, J.G., COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis (2002) Plant J, 32, pp. 457-466. , 10.1046/j.1365-313X.2002.01432.x 12445118
dc.descriptionSugar Cane EST Genome Project http://sucest.lad.ic.unicamp.brVettore, A.L., da Silva, F.R., Kemper, E.L., Souza, G.M., da Silva, A.M., Ferro, M.I., Henrique-Silva, F., Arruda, P., Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane (2003) Genome Res, 13, pp. 2725-2735. , 403815 14613979 10.1101/gr.1532103
dc.descriptionSouza, G.M., Simoes, A.C.Q., Oliveira, K.C., Garay, H.M., Fiorini, L.C., Gomes, F.S., Nishiyama-Junior, M.Y., da Silva, A.M., SUCAST: Prospecting signal transduction in sugarcane (2001) Genet Mol Biol, 24, pp. 25-34. , 10.1590/S1415-47572001000100005
dc.descriptionPapini-Terzi, F.S., Rocha, F.R., Vencio, R.Z., Oliveira, K.C., Felix, J., de, M., Vicentini, R., Souza, G.M., Transcription profiling of signal transduction-related genes in sugarcane tissues (2005) DNA Res, 12, pp. 27-38. , 10.1093/dnares/12.1.27 16106750
dc.descriptionShiu, S.H., Bleecker, A.B., Plant receptor-like kinase gene family: Diversity, function, and signaling (2001) Sci STKE 2001, 2001, pp. RE22. , 11752632
dc.descriptionBerger, S., Jasmonate-related mutants of Arabidopsis as tools for studying stress signaling (2002) Planta, 214, pp. 497-504. , 10.1007/s00425-001-0688-y 11925032
dc.descriptionHowe, G.A., Schilmiller, A.L., Oxylipin metabolism in response to stress (2002) Curr Opin Plant Biol, 5, pp. 230-236. , 10.1016/S1369-5266(02)00250-9 11960741
dc.descriptionDevoto, A., Turner, J.G., Regulation of jasmonate-mediated plant responses in Arabidopsis (2003) Ann Bot, 92, pp. 329-337. , 10.1093/aob/mcg151 12871847
dc.descriptionVerslues, P.E., Zhu, J.K., Before and beyond ABA: Upstream sensing and internal signals that determine ABA accumulation and response under abiotic stress (2005) Biochem Soc Trans, 33, pp. 375-379. , 10.1042/BST0330375 15787610
dc.descriptionhttp://sucest-fun.orgKoide, T., Salem-Izaac, S.M., Gomes, S.L., Vencio, R.Z.N., SpotWhatR: A user-friendly microarray data analysis system (2006) Genet Mol Res, 5, pp. 93-107. , 16755501
dc.descriptionAdditional Data Files https://sucestfun.cbmeg.unicamp.br/pub/signalTamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E.S., Golub, T.R., Interpreting patterns of gene expression with self-organizing maps (1999) Proc Natl Acad Sci USA, 96, pp. 2907-2912. , 15868 10077610 10.1073/pnas.96.6.2907
dc.descriptionShiu, S.H., Bleecker, A.B., Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases (2001) Proc Natl Acad Sci USA, 98, pp. 10763-10768. , 58549 11526204 10.1073/pnas.181141598
dc.descriptionIskandar, H.M., Simpson, R.S., Casu, R.E., Bonnett, G.D., MacLean, D.J., Manners, J.M., Comparison of Reference Genes for Quantitative Real-Time Polymerase Chain Reaction Analysis of Gene Expression in Sugarcane (2004) Plant Molecular Biology Reporter, 22, pp. 325-337
dc.descriptionhttp://www.mysql.comhttp://www.perl.comhttp://www.r-project.orgThe Gene Ontology (GO) project in 2006 (2006) Nucleic Acids Res, 34, pp. D322-D326. , Gene Ontology Consortium 1347384 16381878 10.1093/nar/gkj021
dc.descriptionSonnhammer, E.L.L., Eddy, S.R., Birney, E., Bateman, A., Durbin, R., Pfam: Multiple sequence alignments and HMM-profiles of protein domains (1998) Nucleic Acids Res, 26, pp. 320-322. , 147209 9399864 10.1093/nar/26.1.320
dc.descriptionAbe, H., Yamaguchi-Shinozaki, K., Urao, T., Iwasaki, T., Hosokawa, D., Shinozaki, K., Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression (1997) Plant Cell, 9, pp. 1859-1868. , 157027 9368419 10.1105/tpc.9.10.1859
dc.descriptionNarusaka, Y., Narusaka, M., Seki, M., Umezawa, T., Ishida, J., Nakajima, M., Enju, A., Shinozaki, K., Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: Analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray (2004) Plant Mol Biol, 55, pp. 327-342. , 10.1007/s11103-004-0685-1 15604685
dc.descriptionChinnusamy, V., Schumaker, K., Zhu, J.K., Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants (2004) J Exp Bot, 55, pp. 225-236. , 10.1093/jxb/erh005 14673035
dc.descriptionSeki, M., Narusaka, M., Abe, H., Kasuga, M., Yamaguchi-Shinozaki, K., Carninci, P., Hayashizaki, Y., Shinozaki, K., Monitoring the expression pattern of 1,300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray (2001) Plant Cell, 13, pp. 61-72. , 102214 11158529 10.1105/tpc.13.1.61
dc.descriptionSakuma, Y., Maruyama, K., Osakabe, Y., Qin, F., Seki, M., Shinozaki, K., Yamaguchi-Shinozaki, K., Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression (2006) Plant Cell, 18, pp. 1292-1309. , 1456870 16617101 10.1105/tpc.105.035881
dc.descriptionMerlot, S., Gosti, F., Guerrier, D., Vavasseur, A., Giraudat, J., The ABI1 and ABI2 protein phosphatases 2C act in a negative feedback regulatory loop of the abscisic acid signalling pathway (2001) Plant J, 25, pp. 295-303. , 10.1046/j.1365-313x.2001.00965.x 11208021
dc.descriptionTahtiharju, S., Palva, T., Antisense inhibition of protein phosphatase 2C accelerates cold acclimation in Arabidopsis thaliana (2001) Plant J, 26, pp. 461-470. , 10.1046/j.1365-313X.2001.01048.x 11439132
dc.descriptionGalston, A.W., Sawhney, R.K., Polyamines in plant physiology (1990) Plant Physiol, 94, pp. 406-410. , 1077246 11537482
dc.descriptionLi, Z.Y., Chen, S.Y., Differential accumulation of the S-adenosylmethionine decarboxylase transcript in rice seedlings in response to salt and drought stresses (2000) Theor Appl Genet, 100, pp. 782-788. , 10.1007/s001220051352
dc.descriptionZhang, M., Barg, R., Yin, M., Gueta-Dahan, Y., Leikin-Frenkel, A., Salts, Y., Shabtai, S., Ben-Hayyim, G., Modulated fatty acid desaturation via overexpression of two distinct omega-3 desaturases differentially alters tolerance to various abiotic stresses in transgenic tobacco cells and plants (2005) Plant J, 44, pp. 361-371. , 10.1111/j.1365-313X.2005.02536.x 16236147
dc.descriptionIm, Y.J., Han, O., Chung, G.C., Cho, B.H., Antisense expression of an Arabidopsis omega-3 fatty acid desaturase gene reduces salt/drought tolerance in transgenic tobacco plants (2002) Mol Cells, 13, pp. 264-271. , 12018849
dc.descriptionSachetto-Martins, G., Franco, L.O., de Oliveira, D.E., Plant glycine-rich proteins: A family or just proteins with a common motif? (2000) Biochim Biophys Acta, 1492, pp. 1-14. , 10858526
dc.descriptionMousavi, A., Hotta, Y., Glycine-rich proteins: A class of novel proteins (2005) Appl Biochem Biotechnol, 120, pp. 169-174. , 10.1385/ABAB:120:3:169 15767691
dc.descriptionvan Nocker, S., Vierstra, R.D., Two cDNAs from Arabidopsis thaliana encode putative RNA binding proteins containing glycine-rich domains (1993) Plant Mol Biol, 21, pp. 695-699. , 10.1007/BF00014552 8448367
dc.descriptionAneeta Sanan-Mishra, N., Tuteja, N., Kumar Sopory, S., Salinity- and ABA-induced up regulation and light-mediated modulation of mRNA encoding glycine-rich RNA-binding protein from Sorghum bicolor (2002) Biochem Biophys Res Commun, 296, pp. 1063-1068. , 10.1016/S0006-291X(02)02050-8 12207880
dc.descriptionFreire, M.A., Pages, M., Functional characteristics of the maize RNA-binding protein MA16 (1995) Plant Mol Biol, 29, pp. 797-807. , 10.1007/BF00041169 8541505
dc.descriptionZheng, Z.L., Nafisi, M., Tam, A., Li, H., Crowell, D.N., Chary, S.N., Schroeder, J.I., Yang, Z., Plasma membrane-associated ROP10 small GTPase is a specific negative regulator of abscisic acid responses in Arabidopsis (2002) Plant Cell, 14, pp. 2787-2797. , 152727 12417701 10.1105/tpc.005611
dc.descriptionNahm, M.Y., Kim, S.W., Yun, D., Lee, S.Y., Cho, M.J., Bahk, J.D., Molecular and biochemical analyses of OsRab7, a rice Rab7 homolog (2003) Plant Cell Physiol, 44, pp. 1341-1349. , 10.1093/pcp/pcg163 14701929
dc.descriptionO'Mahony, P.J., Oliver, M.J., Characterization of a desiccation-responsive small GTP-binding protein (Rab2) from the desiccation-tolerant grass Sporobolus stapfianus (1999) Plant Mol Biol, 39, pp. 809-821. , 10.1023/A:1006183431854 10350094
dc.descriptionKim, S.A., Kwak, H.J., Park, M.C., Kim, S.R., Induction of reproductive organ-preferential histone genes by wounding or methyl jasmonate (1998) Mol Cells, 8, pp. 669-677. , 9895118
dc.descriptionLin, F., Xu, S.L., Ni, W.M., Chu, Z.Q., Xu, Z.H., Xue, H.W., Identification of ABA-responsive genes in rice shoots via cDNA macroarray (2003) Cell Res, 13, pp. 59-68. , 10.1038/sj.cr.7290151 12643350
dc.descriptionYamada, S., Komori, T., Hashimoto, A., Kuwata, S., Imaseki, H., Kubo, T., Differential expression of plastidic aldolase genes in Nicotiana plants under salt stress (2000) Plant Sci, 154, pp. 61-69. , 10.1016/S0168-9452(00)00188-6 10725559
dc.descriptionMinhas, D., Grover, A., Transcript level of genes encoding various glycolytic and fermentation enzymes change in response to abiotic stresses (1999) Plant Science, 146, pp. 41-51. , 10.1016/S0168-9452(99)00092-8
dc.descriptionGibson, S.I., Sugar and phytohormone response pathways: Navigating a signalling network (2004) J Exp Bot, 55, pp. 253-264. , 10.1093/jxb/erh048 14673024
dc.descriptionZhang, B., Pan, X., Cobb, G.P., Anderson, T.A., Plant microRNA: A small regulatory molecule with big impact (2006) Dev Biol, 289, pp. 3-16. , 10.1016/j.ydbio.2005.10.036 16325172
dc.descriptionGelhaye, E., Rouhier, N., Jacquot, J.P., The thioredoxin H system of higher plants (2004) Plant Physiol Biochem, 42, pp. 265-271. , 10.1016/j.plaphy.2004.03.002 15120110
dc.descriptionWu, P., Ma, L., Hou, X., Wang, M., Wu, Y., Liu, F., Deng, X.W., Phosphate Starvation Triggers Distinct Alterations of Genome Expression in Arabidopsis Roots and Leaves (2003) Plant Physiol, 132, pp. 1260-1271. , 167066 12857808 10.1104/pp.103.021022
dc.descriptionWissenbach, M., Uberlacker, B., Vogt, F., Becker, D., Salamini, F., Rohde, W., Myb genes from Hordeum vulgare: Tissue-specific expression of chimeric Myb promoter/Gus genes in transgenic tobacco (1993) Plant J, 4, pp. 411-422. , 10.1046/j.1365-313X.1993.04030411.x 8220488
dc.descriptionVinagre, F., Vargas, C., Schwarcz, K., Cavalcante, J., Nogueira, E.M., Baldani, J.I., Ferreira, P.C., Hemerly, A.S., SHR5: A novel plant receptor kinase involved in plant-N2-fixing endophytic bacteria association (2006) J Exp Bot, 57, pp. 559-569. , 10.1093/jxb/erj041 16397001
dc.descriptionEllis, J., Dodds, P., Pryor, T., Structure, function and evolution of plant disease resistance genes (2000) Curr Opin Plant Biol, 3, pp. 278-284. , 10.1016/S1369-5266(00)00080-7 10873844
dc.descriptionGaffney, T., Friedrich, L., Vernooij, B., Negrotto, D., Nye, G., Uknes, S., Ward, E., Ryals, J., Requirement of salicylic acid for the induction of systemic acquired resistance (1993) Science, 261, pp. 754-756. , 10.1126/science.261.5122.754
dc.descriptionDelaney, T.P., Uknes, S., Vernooij, B., Friedrich, L., Weymann, K., Negrotto, D., Gaffney, T., Ryals, J., A central role of salicylic acid in plant disease resistance (1994) Science, 266, pp. 1247-1250. , 10.1126/science.266.5188.1247
dc.descriptionMur, L.A.J., Bi, Y.-M., Darby, R.M., Firek, S., Draper, J., Compromising early salicylic acid accumulation delays the hypersensitive response and increases viral dispersion during lesion establishment in TMV-infected tobacco (1997) Plant J, 12, pp. 1113-1126. , 10.1046/j.1365-313X.1997.12051113.x 9418052
dc.descriptionVargas, C., de Pádua, V., Nogueira, E.M., Vinagre, F., Masuda, H.P., da Silva, F.R., Baldani, J.I., Hemerly, A.S., Signaling pathways mediating the association between sugarcane and endophytic diazotrophic bacteria: A genomic approach (2003) Symbiosis, 35, pp. 159-180
dc.descriptionGrenier, J., Potvin, C., Trudel, J., Asselin, A., Some thaumatin-like proteins hydrolyse polymeric beta-1,3-glucans (1999) Plant J, 19, pp. 473-480. , 10.1046/j.1365-313X.1999.00551.x 10504569
dc.descriptionFranco, O.L., Rigden, D.J., Melo, F.R., Grossi-De-Sa, M.F., Plant alpha-amylase inhibitors and their interaction with insect alpha-amylases (2002) Eur J Biochem, 269, pp. 397-412. , 10.1046/j.0014-2956.2001.02656.x 11856298
dc.descriptionMoller, S.G., Chua, N.H., Interactions and intersections of plant signaling pathways (1999) J Mol Biol, 293, pp. 219-234. , 10.1006/jmbi.1999.2992 10550205
dc.descriptionGazzarrini, S., McCourt, P., Cross-talk in plant hormone signalling: What Arabidopsis mutants are telling us (2003) Ann Bot, 91, pp. 605-612. , 10.1093/aob/mcg064 12714359
dc.descriptionHagen, G., Kleinschmidt, A., Guilfoyle, T., Auxin-regulated gene expression in intact soybean hypocotyl and excised hypocotyl sections (1984) Planta, 162, pp. 147-153. , 10.1007/BF00410211
dc.descriptionStafstrom, J.P., Ripley, B.D., Devitt, M.L., Drake, B., Dormancy-associated gene expression in pea axillary buds. Cloning and expression of PsDRM1 and PsDRM2 (1998) Planta, 205, pp. 547-552. , 10.1007/s004250050354 9684359
dc.descriptionEckert, M., Kaldenhoff, R., Light-induced stomatal movement of selected Arabidopsis thaliana mutants (2000) J Exp Bot, 51, pp. 1435-1442. , 10.1093/jexbot/51.349.1435 10944157
dc.descriptionNag, R., Maity, M.K., Dasgupta, M., Dual DNA binding property of ABA insensitive 3 like factors targeted to promoters responsive to ABA and auxin (2005) Plant Mol Biol, 59, pp. 821-838. , 10.1007/s11103-005-1387-z 16270233
dc.descriptionSadiqov, S.T., Akbulut, M., Ehmedov, V., Role of Ca2+ in drought stress signaling in wheat seedlings (2002) Biochemistry (Mosc), 67, pp. 491-497. , 10.1023/A:1015298309888 11996664
dc.descriptionVartanian, N., Marcotte, L., Giraudat, J., Drought Rhizogenesis in Arabidopsis thaliana (Differential Responses of Hormonal Mutants) (1994) Plant Physiol, 104, pp. 761-767. , 159256 12232124
dc.descriptionLudwig-Müller, J., Schubert, B., Pieper, K., Regulation of IBA synthetase from maize (Zea mays L.) by drought stress and ABA (1995) J Exp Bot, 46, pp. 423-432. , 10.1093/jxb/46.4.423
dc.descriptionAbel, S., Theologis, A., Early genes and auxin action (1996) Plant Physiol, 111, pp. 9-17. , 157808 8685277 10.1104/pp.111.1.9
dc.descriptionWoodward, A.W., Bartel, B., Auxin: Regulation, action, and interaction (2005) Ann Bot, 95, pp. 707-735. , 10.1093/aob/mci083 15749753
dc.descriptionHammond, J.P., Broadley, M.R., White, P.J., Genetic responses to phosphorus deficiency (2004) Ann Bot, 94, pp. 323-332. , 10.1093/aob/mch156 15292042
dc.descriptionLopez-Bucio, J., Hernandez-Abreu, E., Sanchez-Calderon, L., Nieto-Jacobo, M.F., Simpson, J., Herrera-Estrella, L., Phosphate availability alters architecture and causes changes in hormone sensitivity in the Arabidopsis root system (2002) Plant Physiol, 129, pp. 244-256. , 155888 12011355 10.1104/pp.010934
dc.descriptionSwarup, R., Parry, G., Graham, N., Allen, T., Bennett, M., Auxin cross-talk: Integration of signalling pathways to control plant development (2002) Plant Mol Biol, 49, pp. 411-426. , 10.1023/A:1015250929138 12036264
dc.descriptionYang, G., Komatsu, S., Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings (2004) Plant Physiol Biochem, 42, pp. 1-6. , 10.1016/j.plaphy.2003.10.001 15061077
dc.descriptionMao, C., Wang, S., Jia, Q., Wu, P., OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component (2006) Plant Mol Biol, 61, pp. 141-152. , 10.1007/s11103-005-6184-1 16786297
dc.descriptionManning, G., Plowman, G.D., Hunter, T., Sudarsanam, S., Evolution of protein kinase signaling from yeast to man (2002) Trends Biochem Sci, 27, pp. 514-520. , 10.1016/S0968-0004(02)02179-5 12368087
dc.descriptionManning, G., Whyte, D.B., Martinez, R., Hunter, T., Sudarsanam, S., The protein kinase complement of the human genome (2002) Science, 298, pp. 1912-1934. , 10.1126/science.1075762 12471243
dc.descriptionShiu, S.H., Karlowski, W.M., Pan, R., Tzeng, Y.H., Mayer, K.F., Li, W.H., Comparative analysis of the receptor-like kinase family in Arabidopsis and rice (2004) Plant Cell, 16, pp. 1220-1234. , 423211 15105442 10.1105/tpc.020834
dc.descriptionShi, J., Kim, K.N., Ritz, O., Albrecht, V., Gupta, R., Harter, K., Luan, S., Kudla, J., Novel protein kinases associated with calcineurin B-like calcium sensors in Arabidopsis (1999) Plant Cell, 11, pp. 2393-2405. , 144142 10590166 10.1105/tpc.11.12.2393
dc.descriptionHrabak, E.M., Chan, C.W., Gribskov, M., Harper, J.F., Choi, J.H., Halford, N., Kudla, J., Harmon, A.C., The Arabidopsis CDPK-SnRK superfamily of protein kinases (2000) Plant Physiol, 132, pp. 666-680. , 10.1104/pp.102.011999
dc.descriptionWeaver, C.D., Roberts, D.M., Determination of the site of phosphorylation of nodulin 26 by the calcium-dependent protein kinase from soybean nodules (1992) Biochemistry, 31, pp. 8954-8959. , 10.1021/bi00152a035 1390682
dc.descriptionWebb, K.J., Skot, L., Nicholson, M.N., Jorgensen, B., Mizen, S., Mesorhizobium loti increases root-specific expression of a calcium-binding protein homologue identified by promoter tagging in Lotus japonicus (2000) Mol Plant Microbe Interact, 13, pp. 606-616. , 10830260
dc.descriptionWhite, P.J., A Nod and a wave: Calcium signals during nodulation (2001) Trends Plant Sci, 6, p. 141. , 10.1016/S1360-1385(01)01935-5 11286903
dc.descriptionLevy, J., Bres, C., Geurts, R., Chalhoub, B., Kulikova, O., Duc, G., Journet, E.P., Debelle, F., A putative Ca2+ and calmodulin-dependent protein kinase required for bacterial and fungal symbioses (2004) Science, 303, pp. 1361-1364. , 10.1126/science.1093038 14963335
dc.descriptionRomeis, T., Piedras, P., Jones, J.D., Resistance gene-dependent activation of a calcium-dependent protein kinase in the plant defense response (2000) Plant Cell, 12, pp. 803-816. , 139928 10810151 10.1105/tpc.12.5.803
dc.descriptionJonak, C., Hirt, H., Glycogen synthase kinase 3/SHAGGY-like kinases in plants: An emerging family with novel functions (2002) Trends Plant Sci, 7, pp. 457-461. , 10.1016/S1360-1385(02)02331-2 12399181
dc.descriptionSwiderski, M.R., Innes, R.W., The Arabidopsis PBS1 resistance gene encodes a member of a novel protein kinase subfamily (2001) Plant J, 26, pp. 101-112. , 10.1046/j.1365-313x.2001.01014.x 11359614
dc.descriptionEndre, G., Kereszt, A., Kevei, Z., Mihacea, S., Kalo, P., Kiss, G.B., A receptor kinase gene regulating symbiotic nodule development (2002) Nature, 417, pp. 962-966. , 10.1038/nature00842 12087406
dc.descriptionMadsen, E.B., Madsen, L.H., Radutoiu, S., Olbryt, M., Rakwalska, M., Szczyglowski, K., Sato, S., Stougaard, J., A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals (2003) Nature, 425, pp. 637-640. , 10.1038/nature02045 14534591
dc.descriptionCapoen, W., Goormachtig, S., De Rycke, R., Schroeyers, K., Holsters, M., SrSymRK, a plant receptor essential for symbiosome formation (2005) Proc Natl Acad Sci USA, 102, pp. 10369-10374. , 1177396 16006516 10.1073/pnas.0504250102
dc.descriptionUmezawa, T., Yoshida, R., Maruyama, K., Yamaguchi-Shinozaki, K., Shinozaki, K., SRK2C, a SNF1-related protein kinase 2, improves drought tolerance by controlling stress-responsive gene expression in Arabidopsis thaliana (2004) Proc Natl Acad Sci USA, 101, pp. 17306-17311. , 535404 15561775 10.1073/pnas.0407758101
dc.descriptionMustilli, A.C., Merlot, S., Vavasseur, A., Fenzi, F., Giraudat, J., Arabidopsis OST1 protein kinase mediates the regulation of stomatal aperture by abscisic acid and acts upstream of reactive oxygen species production (2002) Plant Cell, 14, pp. 3089-3099. , 151204 12468729 10.1105/tpc.007906
dc.descriptionLi, J.X., Assmann, S.M., An abscisic acid activated and calcium-independent protein kinase from guard cells of fava bean (1996) Plant Cell, 8, pp. 2359-2368. , 161358 12239380 10.1105/tpc.8.12.2359
dc.descriptionLi, J., Wang, X.Q., Watson, M.B., Assmann, S.M., Regulation of abscisic acid-induced stomatal closure and anion channels by guard cell AAPK kinase (2000) Science, 287, pp. 300-303. , 10.1126/science.287.5451.300 10634783
dc.descriptionYoshida, R., Hobo, T., Ichimura, K., Mizoguchi, T., Takahashi, F., Aronso, J., Ecker, J.R., Shinozaki, K., ABA-activated SnRK2 protein kinase is required for dehydration stress signaling in Arabidopsis (2002) Plant Cell Physiol, 43, pp. 1473-1483. , 10.1093/pcp/pcf188 12514244
dc.descriptionXiong, L., Schumaker, K.S., Zhu, J.K., Cell signaling during cold, drought, and salt stress (2002) Plant Cell, (SUPPL. 14), pp. s165-s183
dc.descriptionLiu, J., Ishitani, M., Halfter, U., Kim, C.S., Zhu, J.K., The Arabidopsis thaliana SOS2 gene encodes a protein kinase that is required for salt tolerance (2000) Proc Natl Acad Sci USA, 97, pp. 3730-3734. , 16308 10725382 10.1073/pnas.060034197
dc.descriptionHanks, S.K., Hunter, T., Protein kinases 6. The eukaryotic protein kinase superfamily: Kinase (catalytic) domain strucuture and classification (1995) FASEB J, 9, pp. 576-596. , 7768349
dc.descriptionHanks, S.K., Quinn, A.M., Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification of family members (1991) Methods Enzymol, 200, pp. 38-62. , 1956325
dc.descriptionHanks, S.K., Quinn, A.M., Hunter, T., The protein kinase family: Conserved features and deduced phylogeny of the catalytic domain (1988) Science, 241, pp. 42-52. , 10.1126/science.3291115 3291115
dc.descriptionLawton, M.A., Yamamoto, R.T., Hanks, S.K., Lamb, C.J., Molecular cloning of plant transcripts encoding protein kinase homologs (1989) Proc Natl Acad Sci USA, 86, pp. 3140-3144. , 287081 2541432 10.1073/pnas.86.9.3140
dc.descriptionGribskov, M., Fana, F., Harper, J., Hope, D.A., Harmon, A.C., Smith, D.S., Tax, F.E., Zhang, G., PlantsP: A functional genomics database for plant phosphorylation (2001) Nucleic Acids Res, 29, pp. 111-113. , 29854 11125063 10.1093/nar/29.1.111
dc.descriptionBarsalobres, C.F., Análise da expressão gênica induzida por Diatraea saccharalis em cana-de-açúcar via macroarranjos de colônias bacterianas (2004), MD dissertation Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São PauloUrquiaga, S., Cruz, K.H.S., Boddey, R.M., Contribution of nitrogen fixation to sugar cane: Nitrogen-15 and nitrogen-balance estimates (1992) Soil Science Society of America Journal, 56, pp. 105-114
dc.descriptionHendre, K.R., Iyer, R.S., Kotwain, M., Kluspe, S.S., Mascarenhas, A.F., Rapid multiplication of sugarcane by tissue culture (1983) Sugarcane, 1, pp. 5-8
dc.descriptionHoagland, D.R., Arnon, D.I., (1950) The Water Culture Method for Growing Plants Without Soil, p. 347. , Berkely: California Agr. Expt. Sta. Cir
dc.descriptionMuchhal, U.S., Pardo, J.M., Raghothama, K.G., Phosphate transporters from the higher plant Arabidopsis thaliana (1996) Proc Natl Acad Sci, 93, pp. 10519-10523. , 38418 8927627 10.1073/pnas.93.19.10519
dc.descriptionJames, E.K., Reis, V.M., Olivares, F.L., Baldani, J.I., Dobereiner, J., Infection of sugar cane by the nitrogen-fixing bacterium Acetobacter diazotrophicus (1994) Journal of Experimental Botany, 45, pp. 757-766. , 10.1093/jxb/45.6.757
dc.descriptionReis, V.M., Olivares, F.L., Döbereiner, J., Improved methodology for isolation of Acetobacter diazotrophicus and confirmation of its endophythic habitat (1994) World Journal of Microbiology and Biotechnology, 10, pp. 101-104. , 10.1007/BF00144460
dc.descriptionKing, E.G., Hartley, G.G., Diatraea saccharalis (1985) Handbook of Insect Rearing, 2, pp. 265-270. , Amsterdam: Elsevier Science Singh P, Moore RF
dc.descriptionBroner, I., Law, R.A.P., Evaluation of a modified atmometer for estimating reference ET (1991) Irrigation Science, 12, pp. 21-26. , 10.1007/BF00190705
dc.descriptionYang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J., Speed, T.P., Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation (2002) Nucleic Acids Res, 30, pp. e15. , 100354 11842121 10.1093/nar/30.4.e15
dc.descriptionVencio, R.Z., Koide, T., HTself: Self-Self Based Statistical Test for Low Replication Microarray Studies (2005) DNA Res, 12, pp. 211-214. , 10.1093/dnares/dsi007 16303752
dc.descriptionQuackenbush, J., Computational analysis of microarray data (2001) Nat Rev Genet, 2, pp. 418-427. , 10.1038/35076576 11389458
dc.descriptionLivak, K.J., Schmittgen, T.D., Analysis of relative gene expression data using real-time quantitative PCR and the 2 -ΔΔCt method (2001) Methods, 25, pp. 402-408. , 10.1006/meth.2001.1262 11846609
dc.descriptionThompson, J.D., Higgins, D.G., Gibson, T.G., CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice (1994) Nuclei Acids Research, 22, pp. 4673-4680. , 10.1093/nar/22.22.4673
dc.descriptionhttp://evolve.zoo.ox.ac.uk/software/SeAl/main.htmlSwofford, D.L., (1999), Swofford DL PAUP*. Phylogenetic Analysis using Parsimony (* and other methods, version 4.0 Sinauer Associates, Inc, Sunderland, MassSchultz, J., Milpetz, F., Bork, P., Ponting, C.P., SMART, a simple modular architecture research tool: Identification of signaling domains (1998) Proc Natl Acad Sci USA, 95, pp. 5857-5864. , 34487 9600884 10.1073/pnas.95.11.5857
dc.languageen
dc.publisher
dc.relationBMC Genomics
dc.rightsaberto
dc.sourceScopus
dc.titleSignal Transduction-related Responses To Phytohormones And Environmental Challenges In Sugarcane
dc.typeArtículos de revistas


Este ítem pertenece a la siguiente institución