| dc.creator | Moreira L.M. | |
| dc.creator | De Souza R.F. | |
| dc.creator | Almeida Jr. N.F. | |
| dc.creator | Setubal J.C. | |
| dc.creator | Oliveira J.C.R. | |
| dc.creator | Furlan L.R. | |
| dc.creator | Ferro J.A. | |
| dc.creator | Da Silva A.C.R. | |
| dc.date | 2004 | |
| dc.date | 2015-06-26T14:23:18Z | |
| dc.date | 2015-11-26T14:11:46Z | |
| dc.date | 2015-06-26T14:23:18Z | |
| dc.date | 2015-11-26T14:11:46Z | |
| dc.date.accessioned | 2018-03-28T21:12:20Z | |
| dc.date.available | 2018-03-28T21:12:20Z | |
| dc.identifier | | |
| dc.identifier | Annual Review Of Phytopathology. , v. 42, n. , p. 163 - 184, 2004. | |
| dc.identifier | 664286 | |
| dc.identifier | 10.1146/annurev.phyto.42.040803.140310 | |
| dc.identifier | http://www.scopus.com/inward/record.url?eid=2-s2.0-4744374207&partnerID=40&md5=0601b5b54d9729c1b4345a764968faf0 | |
| dc.identifier | http://www.repositorio.unicamp.br/handle/REPOSIP/94127 | |
| dc.identifier | http://repositorio.unicamp.br/jspui/handle/REPOSIP/94127 | |
| dc.identifier | 2-s2.0-4744374207 | |
| dc.identifier.uri | http://repositorioslatinoamericanos.uchile.cl/handle/2250/1241818 | |
| dc.description | Xylella fastidiosa 9a5c (XF-9a5c) and Xanthomonas axonopodis pv. citri (XAC) are bacteria that infect citrus plants. Sequencing of the genomes of these strains is complete and comparative analyses are now under way with the genomes of other bacteria of the same genera. In this review, we present an overview of this comparative genomic work. We also present a detailed genomic comparison between XF-9a5a and XAC. Based on this analysis, genes and operons were identified that might be relevant for adaptation to citrus. XAC has two copies of a type II secretion system, a large number of cell wall-degrading enzymes and sugar transporters, a complete energy metabolism, a whole set of avirulence genes associated with a type III secretion system, and a complete flagellar and chemotatic system. By contrast, XF-9a5c possesses more genes involved with type IV pili biosynthesis than does XAC, contains genes encoding for production of colicins, and has 4 copies of Type I restriction/modification system while XAC has only one. | |
| dc.description | 42 | |
| dc.description | | |
| dc.description | 163 | |
| dc.description | 184 | |
| dc.description | Alm, R.A., Mattick, J.S., Genes involved in the biogenesis and function of type-4 fimbriae in Pseudomonas aeruginosa (1997) Gene, 192, pp. 89-98 | |
| dc.description | Anraku, Y., Gennis, R.B., The aerobic respiratory chain of Escherichia coli (1987) Trends Biochem. Sci., 12, pp. 262-266 | |
| dc.description | Banks, D., Albibi, R., Chen, J., Lamikanra, O., Jarret, R.L., Smith, B.J., Specific detection of Xylella fastidiosa Pierce's disease strains (1999) Curr. Microbiol., 39, pp. 85-88 | |
| dc.description | Barber, C.E., Tang, J.L., Feng, J.X., Pan, M.Q., Wilson, T.J., A novel regulatory system required for pathogenicity of Xanthomonas campestris is mediated by a small diffusible signal molecule (1997) Mol. Microbiol., 24, pp. 555-566 | |
| dc.description | Barry, T., Colleran, G.G.M., Dunican, L.K., Gannon, F., The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria (1991) PCR Methods Appl., 1, pp. 233-236 | |
| dc.description | Bhattacharyya, A., Stilwagen, S., Ivanova, N., D'Souza, M., Bernal, A., Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains (2002) Proc. Natl. Acad. Sci. USA, 99, pp. 12403-12408 | |
| dc.description | Bhattacharyya, A., Stilwagen, S., Reznik, G., Feil, H., Feil, W.S., Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights (2002) Genome Res., 12, pp. 1556-1563 | |
| dc.description | Bonas, U., Schulte, R., Fenselau, S., Minsavage, G.V., Staskawicz, B.J., Stall, R.E., Isolation of a gene cluster from Xanthomonas campestris pv. vesicatoria that determines pathogenicity and the hypersensitive response on pepper and tomato (1991) Mol. Plant Microbe Interact., 4, pp. 81-88 | |
| dc.description | Capage, M.A., Doherty, D.H., Betlach, M.R., Vanderslice, R.W., (1987), Int. Patent No. WO87/05938Chang, C.J., Garnier, M., Zreik, L., Rossetti, V., Bové, J.M., Culture and serological detection of the xylem-limited bacterium causing citrus variegated chlorosis and its identification as a strain of Xylella fastidiosa (1993) Curr. Microbiol., 27, pp. 137-142 | |
| dc.description | Chang, C.J., Schaad, N.W., Electrophoretic protein profiles of total cell envelopes of xylem-limited plant pathogenic rickettsia-like bacteria (RLB) (1982) Phytopathology, 72, pp. 935-936 | |
| dc.description | Chou, F.L., Chou, H.C., Lin, Y.S., Yang, B.Y., Lin, N.T., The Xanthomonas campestris gumD gene required for synthesis of xanthan gum is involved in normal pigmentation and virulence in causing black rot (1997) Biochem. Biophys. Res. Commun., 233, pp. 265-269 | |
| dc.description | Da Costa, P.I., Franco, C.F., Miranda, V.S., Teixeira, D.C., Hartung, J.S., Strains of Xylella fastidiosa rapidly distinguished by arbitrarily primed-PCR (2000) Curr. Microbiol., 40, pp. 279-282 | |
| dc.description | Da Silva, A.C.R., Ferro, J.A., Reinach, F.C., Farah, C.S., Furlan, L.R., Comparison of the genomes of two Xanthomonas pathogens with differing host specificities (2002) Nature, 417, pp. 459-463 | |
| dc.description | Da Silva, F.R., Vettore, A.L., Kemper, E.L., Leite, A., Arruda, P., Fastidian gum: The Xylella fastidiosa exopolysaccharide possibly involved in bacterial pathogenicity (2001) FEMS Microbiol. Lett., 203, pp. 165-171 | |
| dc.description | Dow, J.M., Daniels, M.J., Xylella genomics and bacterial pathogenicity to plants (2000) Yeast, 17, pp. 263-271 | |
| dc.description | Duan, Y.P., Castaneda, A., Zhao, G., Erdos, G., Gabriel, D.W., Expression of a single, host-specific, bacterial pathogenicity gene in plant cells elicits division, enlargement and cell death (1999) Mol. Plant Microbe Interact., 12, pp. 556-560 | |
| dc.description | Earhart, C.F., (1996) Uptake and Metabolism of Iron and Molybdenum, pp. 1075-1090. , See Ref. 39a | |
| dc.description | Fath, M.J., Mahanty, H.K., Kolter, R., Characterization of a purF operon mutation which affects colicin V production (1989) J. Bacteriol., 171, pp. 3158-3161 | |
| dc.description | Galan, J.E., Collmer, A., Type III secretion machines: Bacterial devices for protein delivery into host cells (1999) Science, 284, pp. 1322-1328 | |
| dc.description | Goel, A.K., Rajagopal, L., Nagesh, N., Sonti, R.V., Genetic locus encoding functions involved in biosynthesis and outer membrane localization of xanthomonadin in Xanthomonas oryzae pv. oryzae (2002) J. Bacterial., 184, pp. 3539-3548 | |
| dc.description | Goel, A.K., Rajagopal, L., Sonti, R.V., Pigment and virulence deficiencies associated with mutations in the aroE gene of Xanthomonas oryzae pv. oryzae (2001) Appl. Environ. Microbiol., 67, pp. 245-250 | |
| dc.description | Gottwald, T.R., Graham, J.H., Bacterial diseases (2000) Compendium of Citrus Diseases, , ed. LW Timmer, SM Garnsey, JH Graham. St. Paul: APS Press | |
| dc.description | Harding, N.E., Cleary, J.M., Ielpi, L., Genetics and biochemistry of xanthan gum production by Xanthomonas campestris (1995) Food Biotechnology Microorganisms, pp. 495-514. , ed. YH Hui, G Khachatourians, New York: VCH Publ | |
| dc.description | Hendson, M., Purcell, A.H., Chen, D., Smart, C., Guilhabert, M., Kirkpatrick, B., Genetic diversity of Pierce's disease strains and other pathotypes of Xylella fastidiosa (2001) Appl. Environ. Microbiol., 67, pp. 895-903 | |
| dc.description | Hugouvieux-Cotte-Pattat, N., Condemine, G., Nasser, W., Reverchon, S., Regulation of pectinolysis in Erwinia chrysanthemi (1996) Annu. Rev. Microbiol., 50, pp. 213-257 | |
| dc.description | Ingledew, W.J., Poole, R.K., The respiratory chains of Escherichia coli (1984) Microbiol. Rev., 48, pp. 222-271 | |
| dc.description | Kamper, S.M., French, W.J., DeKloet, S.R., Genetic relationships of some fastidious xylem-limited bacteria (1985) Int. J. Syst. Bacteriol., 35, pp. 185-188 | |
| dc.description | Katzen, F., Becker, A., Zorreguieta, A., Puhler, A., Ielpi, L., Promoter analysis of the Xanthomonas campestris pv. campestris gum operon directing biosynthesis of the xanthan polysaccharide (1996) J. Bacteriol., 178, pp. 4313-4318 | |
| dc.description | Katzen, F., Ferreiro, D.U., Oddo, C.G., Ielmini, M.V., Becker, A., Xanthomonas campestris pv. campestris gum mutants: Effects on xanthan biosynthesis and plant virulence (1998) J. Bacteriol., 180, pp. 1607-1617 | |
| dc.description | Lazdunski, C.J., Bouveret, E., Rigal, A., Journet, L., Lloubes, R., Benedetti, H., Colicin import into Escherichia coli cells (1998) J. Bacteriol., 180, pp. 4993-5002 | |
| dc.description | Lee, R.F., Beretta, M.J.G., Hartung, J.H., Hooker, M.E., Derrick, K.S., Citrus variegated chlorosis: Confirmation of a Xylella fastidiosa as the causal agent (1993) Summa Phytopathol., 19, pp. 123-125 | |
| dc.description | Loh, J., Garcia, M., Stacey, G., NodV and NodW, a second flavonoid recognition system regulating nod gene expression in Bradyrhizobium japonicum (1997) J. Bacteriol., 179, pp. 3013-3020 | |
| dc.description | Lopes, J.R.S., Beretta, M.J.G., Harakava, R., Almeida, R.P.P., Krugner, R., Garcia Jr., A., Confirmação da transmissão por cigarrinhas do agente causal da clorose variada dos citros, Xylella fastidiosa (1996) Fitopatol. Bras., 1, p. 343 | |
| dc.description | MacFarlane, S.A., Merrick, M., The nucleotide sequence of the nitrogen regulation gene ntrB and the glnA-ntrBC intergenic region of Klebsiella pneumoniae (1985) Nucleic Acids Res., 13, pp. 7591-7606 | |
| dc.description | Martinez-Argudo, I., Martin-Nieto, J., Salinas, P., Maldonado, R., Drummond, M., Contreras, A., Two-hybrid analysis of domain interactions involving NtrB and NtrC two-component regulators (2001) Mol. Microbiol., 40, pp. 169-178 | |
| dc.description | Mehta, A., Rosato, Y.B., Phylogenetic relationships of Xylella fastidiosa strains from different hosts, based on 16S rDNA and 16S-23S intergenic spacer sequences (2001) Int. J. Syst. Evol. Microbiol., 51, pp. 311-318 | |
| dc.description | Meidanis, J., Braga, M.D., Verjovski-Almeida, S., Whole-genome analysis of transporters in the plant pathogen Xylella fastidiosa (2002) Microbiol. Mol. Biol. Rev., 66, pp. 272-299 | |
| dc.description | Moreira, L.M., Da Silva, A.C.R., (2002) Analise Comparativa Entre Os Genomas Dos Fitopatogenos Xylella Fastidiosa e Xanthomonas Axonopodis Pv Citri, , MSc. thesis. Univ. Sao Paulo, Chem. Inst | |
| dc.description | Neidhardt, F.C., Curtiss, R.I., Ingraham, J.L., Lin, E.C.C., Low, K.B., Magasanik, B., Reznikopp, W.S., Umbarger, H.E., (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology, , Washington, DC: ASM Press | |
| dc.description | Newman, K., Almeida, R.P.P., Purcell, A.H., Lindow, S.E., Cell-cell signaling controls Xylella fastidiosa interactions with both insects and plants (2004) Proc. Natl. Acad. Sci.USA, 101, pp. 1737-1742 | |
| dc.description | Nierman, W.C., Feldblyum, T.V., Laub, M.T., Paulsen, I.T., Nelson, K.E., Complete genome sequence of Caulobacter crescentus (2001) Proc. Natl. Acad. Sci. USA, 98, pp. 4136-4141 | |
| dc.description | Nunes, L.R., Rosato, Y.B., Muto, N.H., Yanai, G.M., Da Silva, V.S., Microarray analyses of Xylella fastidiosa provide evidence of coordinated transcription control of laterally transferred elements (2003) Genome Res., 13, pp. 570-578 | |
| dc.description | Pickard, D., Wain, J., Baker, S., Line, A., Chohan, S., Composition, acquisition, and distribution of the Vi exopolysaccharide- encoding Salmonella enterica pathogenicity island SPI-7 (2003) J. Bacteriol., 185, pp. 5055-5065 | |
| dc.description | Poole, R.K., Ingledew, W.J., Pathways of electrons to oxygen (1987) Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology, pp. 170-200. , ed. FC Neidhardt, JL Ingraham, KB Low, B Magasanik, M Schaechter & HE Umbarger, Washington, DC: ASM Press | |
| dc.description | Pooler, M.R., Hartung, J.S., Genetic relationships among strains of Xylella fastidiosa from RAPD-PCR data (1995) Curr. Microbiol., 31, pp. 134-137 | |
| dc.description | Poplawsky, A.R., Chun, W., pigB determines a diffusible factor needed for extracellular polysaccharide slime and xanthomonadin production in Xanthomonas campestris pv. campestris (1997) J. Bacteriol., 179, pp. 439-444 | |
| dc.description | Poplawsky, A.R., Chun, W., Xanthomonas campestris pv. campestris requires a functional pigB for epiphytic survival and host infection (1998) Mol. Plant Microbe Interact., 11, pp. 466-475 | |
| dc.description | Poplawsky, A.R., Urban, S.C., Chun, W., Biological role of xanthomonadin pigments in Xanthomonas campestris pv. campestris (2000) Appl. Environ. Microbiol., 66, pp. 5123-5127 | |
| dc.description | Redaschi, N., Bickle, T.A., (1996) DNA Restriction and Modification Systems, pp. 773-781. , See Ref. 39a | |
| dc.description | Reizer, J., Bachem, S., Reizer, A., Arnaud, M., Saier Jr., M.H., Stulke, J., Novel phosphotransferase system genes revealed by genome analysis - The complete complement of PTS proteins encoded within the genome of Bacillus subtilis (1999) Microbiology, 145, pp. 3419-3429 | |
| dc.description | Rossetti, V., Garnier, M., Bove, J.M., Beretta, M.J.G., Teixeira, A.R.R., Présence de bactéries dans le xylème d'orangers atteints de chlorose variéguée, une nouvelle maladie des agrumes au Brésil (1990) C. R. Acad. Paris, 310, pp. 345-349 | |
| dc.description | Rudolph, K., Infection of the plant by Xanthomonas (1993) Xanthomonas, pp. 193-264. , ed. JG Swings, EL Civerolo, London: Chapman & Hall | |
| dc.description | Russel, M., Macromolecular assembly and secretion across the bacterial cell envelope: Type II protein secretion systems (1998) J. Mol. Biol., 279, pp. 485-499 | |
| dc.description | Scarpari, L.M., Lambais, M.R., Silva, D.S., Carraro, D.M., Carrer, H., Expression of putative pathogenicity-related genes in Xylella fastidiosa grown at low and high cell density conditions in vitro (2003) FEMS Microbiol. Lett., 222, pp. 83-92 | |
| dc.description | Simpson, A.J., Reinach, F.C., Arruda, P., Abreu, F.A., Acencio, M., The genome sequence of the plant pathogen Xylella fastidiosa (2000) Nature, 406, pp. 151-157 | |
| dc.description | Slater, H., Alvarez-Morales, A., Barber, C.E., Daniels, M.J., Dow, J.M., A two-component system involving an HD-GYP domain protein links cell-cell signalling to pathogenicity gene expression in Xanthomonas campestris (2000) Mol. Microbiol., 38, pp. 986-1003 | |
| dc.description | Stock, J.B., Surette, M.G., (1996) Chemotaxis, pp. 1103-1129. , See Ref. 39a | |
| dc.description | Strom, M.S., Lory, S., Structure-function and biogenesis of the type IV pili (1993) Annu. Rev. Microbiol., 47, pp. 565-596 | |
| dc.description | Tang, J.L., Feng, J.X., Li, Q.Q., Wen, H.X., Zhou, D.L., Cloning and characterization of the rpfC gene of Xanthomonas oryzae pv. oryzae: Involvement in exopolysaccharide production and virulence to rice (1996) Mol. Plant Microbe Interact., 9, pp. 664-666 | |
| dc.description | Tang, J.L., Liu, Y.N., Barber, C.E., Dow, J.M., Wootton, J.C., Daniels, M.J., Genetic and molecular analysis of a cluster of rpf genes involved in positive regulation of synthesis of extracellular enzymes and polysaccharide in Xanthomonas campestris pathovar campestris (1991) Mol. Gen. Genet., 226, pp. 409-417 | |
| dc.description | Van Sluys, M.A., De Oliveira, M.C., Monteiro-Vitorello, C.B., Miyaki, C.Y., Furlan, L.R., Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa (2003) J. Bacteriol., 185, pp. 1018-1026 | |
| dc.description | Van Sluys, M.A., Monteiro-Vitorello, C.B., Camargo, L.E., Menck, C.F., Da Silva, A.C., Comparative genomic analysis of plant-associated bacteria (2002) Annu. Rev. Phytopathol., 40, pp. 169-189 | |
| dc.description | Vojnov, A.A., Slater, H., Daniels, M.J., Dow, J.M., Expression of the gum operon directing xanthan biosynthesis in Xanthomonas campestris and its regulation in planta (2001) Mol. Plant Microbe Interact., 14, pp. 768-774 | |
| dc.description | Whitehead, N.A., Barnard, A.M., Slater, H., Simpson, N.J., Salmond, G.P., Quorum-sensing in Gram-negative bacteria (2001) FEMS Microbiol. Rev., 25, pp. 365-404 | |
| dc.description | Wiggerich, H.G., Klauke, B., Koplin, R., Priefer, U.B., Puhler, A., Unusual structure of the tonB-exb DNA region of Xanthomonas campestris pv. campestris: tonB, exbB, and exbD1 are essential for ferric iron uptake, but exbD2 is not (1997) J. Bacteriol., 179, pp. 7103-7110 | |
| dc.description | Wylie, J.L., Worobec, E.A., The OprB porin plays a central role in carbohydrate uptake in Pseudomonas aeruginosa (1995) J. Bacteriol., 177, pp. 3021-3026 | |
| dc.language | en | |
| dc.publisher | | |
| dc.relation | Annual Review of Phytopathology | |
| dc.rights | fechado | |
| dc.source | Scopus | |
| dc.title | Comparative Genomics Analyses Of Citrus-associated Bacteria | |
| dc.type | Artículos de revistas | |
