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Deep sequencing to detect diversity of Trypanosoma cruzi infection in patients co-infected with HIV and Chagas disease
(Oxford University Press, 2021)
Chagas disease, caused by Trypanosoma cruzi, can reactivate and cause severe acute disease in immunocompromised patients such as those infected with HIV. We conducted amplicon deep sequencing of a 327-base pair fragment ...
Amplicon-metagenomic analysis of fungi from antarctic terrestrial habitats
(Frontiers Media S.A., 2017)
© 2017 Baeza, Barahona, Alcaíno and Cifuentes. In cold environments such as polar regions, microorganisms play important ecological roles, and most of our knowledge about them comes from studies of cultivable microorganisms. ...
Multiplex Amplicon Sequencing For Microbe Identification In Community-based Culture Collections
(Nature Publishing Group, 2016)
Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale
(Oxford University Press, 2019)
BACKGROUND: In light of the current biodiversity crisis, DNA barcoding is developing into an essential tool to quantify state shifts in global ecosystems. Current barcoding protocols often rely on short amplicon sequences, ...
The fecal microbiota of wild and captive raptors
(Bmc, 2020-05-06)
Background The microorganisms populating the gastro-intestinal tract of vertebrates, collectively known as microbiota, play an essential role in digestion and are important in regulating the immune response. Whereas the ...
Microbial diversity of the soil, rhizosphere and wine from an emerging wine-producing region of Argentina
(Elsevier, 2022-01)
The aim of this study was to characterize the microbial communities of Malbec vineyards recently established in a re-emerging wine region of Argentina. We studied the wine microbiota at different fermentation stages and ...
Microbial composition of spiny ants (Hymenoptera: Formicidae: Polyrhachis) across their geographic range
(2017-04-05)
Background: Symbiotic relationships between insects and bacteria are found across almost all insect orders, including Hymenoptera. However there are still many remaining questions about these associations including what ...
Micobioma endolítico de recifes biogênicos na região da Oceaniadesvendado pela metagenômica de amplicon
(Universidade Federal de Minas GeraisUFMG, 2018-08-02)
Biogenic reefs form a complex marine ecosystem, their biological, economic and social importance is incalculable. They develop under special natural conditions and very slowly. Its three-dimensional structures are generally ...
Fecal Microbiome Characteristics and the Resistome Associated With Acquisition of Multidrug-Resistant Organisms Among Elderly Subjects
(Frontiers Media S.A., 2019-09)
Infections caused by multidrug-resistant organisms (MDRO) lead to considerable morbidity and mortality. The elderly population residing in nursing homes are a major reservoir of MDRO. Our objective was to characterize the ...