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On the Search for Retrotransposons: Alternative Protocols to Obtain Sequences to Learn Profile Hidden Markov Models
(2018-05-01)
Profile hidden Markov models (pHMMs) have been used to search for transposable elements (TEs) in genomes. For the learning of pHMMs aimed to search for TEs of the retrotransposon class, the conventional protocol is to use ...
Copia Retrotransposon in the Zaprionus Genus: Another Case of Transposable Element Sharing with the Drosophila melanogaster Subgroup
(SPRINGER, 2011)
Copia is a retrotransposon that appears to be distributed widely among the Drosophilidae subfamily. Evolutionary analyses of regulatory regions have indicated that the Copia retrotransposon evolved through both positive ...
Copia Retrotransposon in the Zaprionus Genus: Another Case of Transposable Element Sharing with the Drosophila melanogaster Subgroup
(Springer, 2011-03-01)
Copia is a retrotransposon that appears to be distributed widely among the Drosophilidae subfamily. Evolutionary analyses of regulatory regions have indicated that the Copia retrotransposon evolved through both positive ...
Copia Retrotransposon in the Zaprionus Genus: Another Case of Transposable Element Sharing with the Drosophila melanogaster Subgroup
(Springer, 2011-03-01)
Copia is a retrotransposon that appears to be distributed widely among the Drosophilidae subfamily. Evolutionary analyses of regulatory regions have indicated that the Copia retrotransposon evolved through both positive ...
Saci-1, -2, and -3 and Perere, four novel retrotransposons with high transcriptional activities from the human parasite Schistosoma mansoni
(Amer Soc MicrobiologyWashingtonEUA, 2004)
Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila
(Springer Heidelberg, 2011-07-01)
The history of transposable elements over evolutionary time can often be partially reconstructed on the basis of genome analysis. In this study, we identified and extensively characterized the NLTR BS retrotransposon in ...
Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila
(Springer Heidelberg, 2011-07-01)
The history of transposable elements over evolutionary time can often be partially reconstructed on the basis of genome analysis. In this study, we identified and extensively characterized the NLTR BS retrotransposon in ...
Transcriptionally active LTR retrotransposons in Eucalyptus genus are differentially expressed and insertionally polymorphic
(BioMed Central, 2015-08-14)
In Eucalyptus genus, studies on genome composition and transposable elements (TEs) are particularly scarce. Nearly half of the recently released Eucalyptus grandis genome is composed by retrotransposons and this data ...
Becoming a Selfish Clan: Recombination Associated to Reverse-Transcription in LTR Retrotransposons
(Oxford University Press, 2019-11)
Transposable elements (TEs) are parasitic DNA bits capable of mobilization and mutagenesis, typically suppressed by host's epigenetic silencing. Since the selfish DNA concept, it is appreciated that genomes are also molded ...
Terminal repeat retrotransposons as DNA markers in fungi
(Journal of Basic Microbiology, 2018)