Buscar
Mostrando ítems 1-10 de 1990
Computer science and parsimony: a reappraisal, with discussion of methods for poorly structured datasets
(Wiley, 2015-04)
In recent years, several publications in computer science journals have proposed new heuristic methods for parsimony analysis. This contribution discusses those papers, including methods highly praised by their authors, ...
Parsimony, likelihood, and simplicity
(Wiley Blackwell Publishing, Inc, 2003-02)
The latest charge against parsimony in phylogenetic inference is that it involves estimating too many parameters. The charge is derived from the fact that, when each character is allowed a branch length vector of its own ...
Distributional modelling and parsimony analysis of endemicity of Senecio in the Mediterranean-type climate area of Central Chile
(2004)
Aim: Floristic blocks and areas of endemism resulting from a parsimony analysis of endemicity (PAE) using raw floristic data versus data generated from distributional modelling for 130 species in the genus Senecio Tourn. ...
Hide and vanish: data sets where the most parsimonious tree is known but hard to find, and their implications for tree search methods
(Elsevier, 2014-06)
Three different types of data sets, for which the uniquely most parsimonious tree can be known exactly but is hard to find with heuristic tree search methods, are studied. Tree searches are complicated more by the shape ...
Parsimony analysis of phylogenomic datasets (II): evaluation of PAUP*, MEGA and MPBoot
(Wiley Blackwell Publishing, Inc, 2021-06)
This paper examines the implementation of parsimony methods in the programs PAUP*, MEGA and MPBoot, and compares them with TNT. PAUP* implements standard, well-tested algorithms, and flexible search strategies and options ...
Parsimony analysis of phylogenomic datasets (II): evaluation of PAUP*, MEGA and MPBoot
(Wiley Blackwell Publishing, Inc, 2022-02)
This paper examines the implementation of parsimony methods in the programs PAUP*, MEGA and MPBoot, and compares them with TNT. PAUP* implements standard, well-tested algorithms, and flexible search strategies and options ...
A temporal extension to the parsimonious covering theory
(Elsevier Science BvAmsterdamHolanda, 1997)
Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)
(Wiley Blackwell Publishing, Inc, 2021-09)
We discuss here the use of TNT (Tree Analysis using New Technology) for phylogenomic analysis. For such data, parsimony is a useful alternative to model-based analyses, which frequently utilize models that make unrealistic ...
Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)
(Wiley Blackwell Publishing, Inc, 2022-02)
We discuss here the use of TNT (Tree Analysis using New Technology) for phylogenomic analysis. For such data, parsimony is a useful alternative to model-based analyses, which frequently utilize models that make unrealistic ...