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Investigation, expression, and molecular modeling of ORF2, a metagenomic lipolytic enzyme
(Humana Press Inc, 2015-04-01)
One clone exhibiting lipolytic activity was selected among 30 positives from a metagenomic library of a microbe consortium specialized in petroleum hydrocarbon degradation. From this clone, a sublibrary was constructed and ...
Shotgun Metagenomic Profiles Have a High Capacity To Discriminate Samples of Activated Sludge According to Wastewater Type
(American Society for Microbiology, 2016-09)
This study was conducted to investigate whether functions encoded in the metagenome could improve our ability to understand the link between microbial community structure and function in activated sludge. By analyzing data ...
Towards a Comprehensive Search of Putative Chitinases Sequences in Environmental Metagenomic Databases
(Scientific Research Publishing, Inc,, 2015)
Comparative analysis of metagenomes from Extremely acidic environments using a phylogenetic approach.
(2014)
Background
Next generation sequencing (NGS) has dramatically increased the number of metagenomes available in public
databases profoundly affecting the ability to do comparative analyses. This work uses phylogenetic networks ...
Metagenomic analysis reveals adaptations to a cold-adapted lifestyle in a low-temperature acid mine drainage stream
(Oxford University Press, 2015-04)
An acid mine drainage (pH 2.5-2.7) stream biofilm situated 250 m below ground in the low-temperature (6-10°C)Kristineberg mine, northern Sweden, contained a microbial community equipped for growth at low temperature and ...
Arsenic metabolism in high altitude modern stromatolites revealed by metagenomic analysis
(Nature Publishing Group, 2017-12)
Modern stromatolites thrive only in selected locations in the world. Socompa Lake, located in the Andean plateau at 3570 masl, is one of the numerous extreme Andean microbial ecosystems described over recent years. Extreme ...
IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
(BioMed Central Ltd., 2016-12-16)
Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and often result in sub-optimal data usage. Here we present IMP, a reproducible and modular pipeline for the integrated and ...
Investigation, expression, and molecular modeling of ORF2, a metagenomic lipolytic enzyme
(Humana Press Inc, 2015)
Investigation, expression, and molecular modeling of ORF2, a metagenomic lipolytic enzyme
(Humana Press Inc, 2015)