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Comparing de novo and reference-based transcriptome assembly strategies by applying them to the blood-sucking bug Rhodnius prolixus
(Elsevier B. V., 2015-05-22)
High Throughput Sequencing capabilities have made the process of assembling a transcriptome easier, whether or not there is a reference genome. But the quality of a transcriptome assembly must be good enough to capture the ...
Sequencing and de novo assembly of the red cusk-eel (Genypterus chilensis) transcriptome
(Elsevier B.V., 2014)
© 2014 Elsevier B.V. The red cusk-eel (Genypterus chilensis) is an endemic fish species distributed along the coasts of the Eastern South Pacific. Biological studies on this fish are scarce, and genomic information for G. ...
Dataset of the first transcriptome assembly of the tree crop “yerba mate” (Ilex paraguariensis) and systematic characterization of protein coding genes
(Elsevier Inc, 2018-04)
This contribution contains data associated to the research article entitled “Exploring the genes of yerba mate (Ilex paraguariensis A. St.-Hil.) by NGS and de novo transcriptome assembly” (Debat et al., 2014) [1]. By means ...
The Rhinella arenarum transcriptome : de novo assembly, annotation and gene prediction
The common toad Rhinella arenarum is widely distributed in Argentina, where it is utilised as an autochthonous model in ecotoxicological research and environmental toxicology. However, the lack of a reference genome makes ...
Insights from tissue-specific transcriptome sequencing analysis of Triatoma infestans
(Fundação Oswaldo Cruz, 2018)
Separating homeologs by phasing in the tetraploid wheat transcriptome
(BioMed Central, 2013-06)
Background: The high level of identity among duplicated homoeologous genomes in tetraploid pasta wheat presents substantial challenges for de novo transcriptome assembly. To solve this problem, we develop a specialized ...
De novo assembly of the carrot transcriptome from short-read sequences identifies novel genes and reveals genetic diversity
(Biomed Central, 2011-08)
Background: Among next generation sequence technologies, platforms such as Illumina and SOLiD produce short reads but with higher coverage and lower cost per sequenced nucleotide than 454 or Sanger. A challenge now is to ...
De novo transcriptome assembly for a non-model species, the blood-sucking bug Triatoma brasiliensis, a vector of Chagas disease
(Springer, 2015-04-01)
High throughput sequencing (HTS) provides new research opportunities for work on non-model organisms, such as differential expression studies between populations exposed to different environmental conditions. However, such ...