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Genomic re-assessment of the transposable element landscape of the potato genome
(Springer Verlag Berlín, 2020-05-20)
Transposable elements are DNA sequences with the ability to auto-replicate and move that occupy large proportions of the host genome. TEs are responsible for shaping the genome size and are major drivers of gene regulation, ...
Genome-wide analysis of transposable elements in the coffee berry borer Hypothenemus hampei (Coleoptera: Curculionidae): description of novel families
(2017-06-01)
The coffee berry borer (CBB) Hypothenemus hampei is the most limiting pest of coffee production worldwide. The CBB genome has been recently sequenced; however, information regarding the presence and characteristics of ...
Genomic re-assessment of the transposable element landscape of the potato genome
(Springer, 2020-05)
Transposable elements (TEs) are DNA sequences with the ability to autoreplicate and move throughout the host genome. TEs are major drivers in stress response and genome evolution. Given their significance, the development ...
An Atlas of Plant Transposable Elements
(2021-01-01)
Advances in genomic sequencing have recently offered vast opportunities for biological exploration, unraveling the evolution and improving our understanding of Earth biodiversity. Due to distinct plant species characteristics ...
Transposable element annotation in non-model species: The benefits of species-specific repeat libraries using semi-automated EDTA and DeepTE de novo pipelines
(2022-02-01)
Transposable elements (TEs) are significant genomic components which can be detected either through sequence homology against existing databases or de novo, with the latter potentially reducing the risk of underestimating ...
Anotação e caracterização de elementos de transposição no genoma de Drosophila mojavensis e de sua espécie irmã D. arizonae
(Universidade Estadual Paulista (Unesp), 2019-02-22)
Elementos de transposição (TEs) são sequências de DNA repetitivas capazes de se moverem a partir de um local para outro no genoma e a capacidade replicativa dessas sequências é a essência de seu sucesso evolutivo. O presente ...
A machine learning based framework to identify and classify long terminal repeat retrotransposons
(2018-04-01)
Transposable elements (TEs) are repetitive nucleotide sequences that make up a large portion of eukaryotic genomes. They can move and duplicate within a genome, increasing genome size and contributing to genetic diversity ...
Dinâmica evolutiva de elementos de transposição nas espécies irmãs Rhodnius robustus e R. prolixus
(Universidade Estadual Paulista (Unesp), 2019-02-22)
Os elementos de transposição (TEs) são sequências repetitivas amplamente distribuídas nos genomas que representam importantes fontes geradoras de variabilidade genética. As características genômicas derivadas de sua ...
PlaNC-TE: a comprehensive knowledgebase non-coding RNAs and transposable elements in plants
(Oxford Univ Press, 2018-09-13)
Transposable elements (TEs) play an essential role in the genetic variability of eukaryotic species. In plants, they may comprise up to 90% of the total genome. Non-coding RNAs (ncRNAs) are known to control gene expression ...