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Ab Initio Protein Structure Prediction Using Evolutionary Approach: A Survey
(Instituto de Informática - Universidade Federal do Rio Grande do Sul, 2021)
A program for terpenoid skeleton prediction based on botanical information
(2003-01-01)
This paper describes a new program developed to the SISTEMAT expert system, the SISOCBOT program. This program employs the botanical data analysis and predicts, at the end of analysis, the probable skeleton of a compound ...
Mapping of protein structural ensembles by chemical shifts
(Springer NetherlandsDordrecht, 2010-10)
Applying the chemical shift prediction programs SHIFTX and SHIFTS to a data base of protein structures with known chemical shifts we show that the averaged chemical shifts predicted from the structural ensembles explain ...
Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks
(2009)
Background: Prediction of protein structures from their sequences is still one of the open grand challenges of computational biology. Some approaches to protein structure prediction, especially ab initio ones, rely to some ...
Structure-based activity prediction of CYP21A2 stability variants: A survey of available gene variations
(Nature Publishing Group, 2016-12)
Congenital adrenal hyperplasia due to 21-hydroxylase deficiency accounts for 90-95% of CAH cases. In this work we performed an extensive survey of mutations and SNPs modifying the coding sequence of the CYP21A2 gene. Using ...
Prediction of Spontaneous Protein Deamidation from Sequence-Derived Secondary Structure and Intrinsic Disorder
(Public Library Of Science, 2015-12)
Asparagine residues in proteins undergo spontaneous deamidation, a post-translational modification that may act as a molecular clock for the regulation of protein function and turnover. Asparagine deamidation is modulated ...
Model-Free Predictive Current Control of a Voltage Source Inverter
(Institute of Electrical and Electronics Engineers, 2020-11)
Conventional model predictive control (MPC) of power converter has been widely applied to power inverters achieving high performance, fast dynamic response, and accurate transient control of power converter. However, the ...
Ab initio protein folding simulations using atomic burials as informational intermediates between sequence and structure
(Wiley-Blackwell, 2014-07-01)
The three-dimensional structure of proteins is determined by their linear amino acid sequences but decipherment of the underlying protein folding code has remained elusive. Recent studies have suggested that burials, as ...
Improving Predictions of Protein-Protein Interfaces by Combining Amino Acid-Specific Classifiers Based on Structural and Physicochemical Descriptors with Their Weighted Neighbor Averages
(Public Library ScienceSan FranciscoEUA, 2014)