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A strategy to identify genomic expression at single-cell level or a small number of cells
(Pontificia Universidad Católica de Valparaíso, 2005)
Probing infectious disease by single-cell RNA sequencing: progresses and perspectives
The increasing application of single-cell RNA sequencing (scRNA-seq) technology in life
science and biomedical research has significantly increased our understanding of the cellular
heterogeneities in immunology, oncology ...
Prediction of cell position using single-cell transcriptomic data: an iterative procedure
(F1000 Research Ltd, 2019-10)
Single-cell sequencing reveals cellular heterogeneity but not cell localization. However, by combining single-cell transcriptomic data with a reference atlas of a small set of genes, it would be possible to predict the ...
Phylogeny, classification and diversity of Choreotrichia and Oligotrichia (Ciliophora, Spirotrichea)
(Academic Press Inc Elsevier Science, 2017-07)
Ciliated protists in the subclasses Choreotrichia and Oligotrichia are major components of marine plankton. Despite their ecological relevance, there are uncertainties in their systematics and diversity. We retrieved and ...
Interpretable Deep Embeddings for Single-cell RNA-seq Clustering Analysis via Gene Attention
(Universidad de los AndesIngeniería de Sistemas y ComputaciónFacultad de IngenieríaDepartamento de Ingeniería Sistemas y Computación, 2022-12-16)
This work presents a ZINB model-based denoising autoencoder that offers interpretable deep embeddings through a gene attention mechanism for single-cell RNA-seq clustering. Our method performs a dimensionality reduction ...
Single-cell sequencing unveils the lifestyle and CRISPR-based population history of Hydrotalea sp. in acid mine drainage
(Blackwell Scientific Publications, 2018)