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A novel SARS-CoV-2 viral sequence bioinformatic pipeline has found genetic evidence that the viral 3 ' untranslated region (UTR) is evolving and generating increased viral diversity
(Frontiers Media, 2021)
An unprecedented amount of SARS-CoV-2 sequencing has been performed, however,
novel bioinformatic tools to cope with and process these large datasets is needed.
Here, we have devised a bioinformatic pipeline that inputs ...
Molecular surveillance of the Plasmodium vivax multidrug resistance 1 gene in Peru between 2006 and 2015
(BioMed Central, 2020)
Background: The high incidence of Plasmodium vivax infections associated with clinical severity and the emergence of chloroquine (CQ) resistance has posed a challenge to control efforts aimed at eliminating this disease. ...
Results of genetic and demographic analyses including probability of capturing the deepest coalescent event (Prob.), number of haplotypes (K), haplotype diversity (h), nucleotide diversity (π), Fu’s Fs (Fs), Tajima’s D (DT), Probability of DT ≠ 0 [Prob. (|DT|) > 0], probability of DT ≠ 0 based on coalescent simulations (P), Ramos-Onsins & Rozas’ (R2), probability of R2 based on coalescent simulations (P), maximum pairwise differences between any two sequences (k).Resultados de los análisis genéticos y demográficos, incluyendo la probabilidad de capturar el evento coalescente más profundo (Prob.), número de haplotipos (K), diversidad de haplotipos (h), diversidad de nucleótidos (π), Fs de Fu (Fs), D de Tajima (DT), Probabilidad de DT ≠ 0 [Prob. (|DT|) > 0], probabilidad de DT ≠ 0 basada en simulaciones coalescentes (P), Ramos-Onsins & Rozas' (R2), probabilidad de R2 basada en simulaciones coalescentes (P), diferencias máximas por pares entre dos secuencias cualesquiera (k).
(Plos One, 2015-06-25)
The sum of squared deviations (SSD) is also given.
Results of genetic and demographic analyses including probability of capturing the deepest coalescent event (Prob.), number of haplotypes (K), haplotype diversity (h), ...
DNA sequence variation of drought-response candidate genes in Austrocedrus chilensis
(Univ Catolica de Valparaiso, 2013-03-08)
Background: Austrocedrus chilensis (D. Don) Pic. Ser. et Bizzarri commonly known as Patagonian cypress is a member of the Cupressaceae family, characterized by a high adaptive potential for growing in marginal areas and ...
Haplotypes traceability and genetic variability of the breeding population of pacu (Piaractus mesopotamicus) revealed by mitochondrial dna
(2021-01-01)
The main objective of this study was to estimate the genetic diversity levels and haplotype traceability in pacu Piaractus mesopotamicus from the breeding program located in Brazil by analyses of the mitochondrial DNA ...
Variabilidad genética del ADN mitocondrial de Vultur gryphus (cóndor andino) en Cusco y Apurímac a partir de plumas de muda
(Facultad de Ciencias Biológicas. Universidad Nacional Mayor de San Marcos, 2021)
The intrapopulation genetic variability of Vultur gryphus (Andean condors) from Cusco and Apurimac regions was evaluated by amplification and sequencing of mitochondrial DNA corresponding to the control region and 12S ...
Filogeografía de Elacatinus puncticulatus (Teleostei, Gobiidae) en el Pacífico oriental tropical
(Universidad Michoacana de San Nicolás de Hidalgo, 2014-02)
Geographic barriers to the dispersal of individuals can generate or maintain genetic structure among populations. In the Tropical Eastern Pacific, Central American and Sinaloan gaps, are described as discontinuities ...
Drug resistance and population structure of Plasmodium falciparum and Plasmodium vivax in the Peruvian Amazon
(Springer Nature, 2022)
Malaria is a major health problem in Peru despite substantial progress achieved by the ongoing malaria elimination program. This study explored the population genetics of 63 Plasmodium falciparum and 170 P. vivax cases ...
Results of genetic and demographic analyses of Berberis trifoliolata's phylogroupsResultados de los análisis genéticos y demográficos de los filogrupos de Berberis trifoliolata
(Plos One, 2017-06-26)
Haplotype diversity (h), nucleotide diversity (π), Fu’s FS (Fs), Tajima’s D (DT) and Ramos-Onsins and Rozas (R2) are indicated.