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Hla-mapper: An application to optimize the mapping of HLA sequences produced by massively parallel sequencing procedures
(2018-09-01)
A challenging task when more than one HLA gene is evaluated together by second-generation sequencing is to achieve a reliable read mapping. The polymorphic and repetitive nature of HLA genes might bias the read mapping ...
A straightforward assay to evaluate DNA integrity and optimize next-generation sequencing for clinical diagnosis in oncology
(Experimental and Molecular Pathology, 2018)
Nonoverlapping Clone Pooling for High-Throughput Sequencing
(Ieee Computer Soc, 2013-09-01)
Simultaneously sequencing multiple clones using second-generation sequencers can speed up many essential clone-based sequencing methods. However, in applications such as fosmid clone sequencing and full-length cDNA sequencing, ...
Controlling for contamination in re-sequencing studies with a reproducible web-based phylogenetic approach
(2014)
Polymorphism discovery is a routine application of next-generation sequencing technology where multiple samples are sent to a service provider for library preparation, subsequent sequencing, and bioinformatic analyses. The ...
Evaluation of MC1R high-throughput nucleotide sequencing data generated by the 1000 genomes project
(2017-01-01)
The advent of next-generation sequencing allows simultaneous processing of several genomic regions/individuals, increasing the availability and accuracy of whole-genome data. However, these new approaches may present some ...
Transcriptomic crosstalk between fungal invasive pathogens and their host cells: Opportunities and challenges for next-generation sequencing methods
(2016-03-01)
Fungal invasive infections are an increasing health problem. The intrinsic complexity of pathogenic fungi and the unmet clinical need for new and more effective treatments requires a detailed knowledge of the infection ...
Case report: First report and phylogenetic analysis of porcine astroviruses in Chile
(Frontiers Media, 2021)
Porcine Astrovirus (PoAstV) causes mild diarrhea in young pigs and is considered an
emerging virus in the swine industry worldwide. PoAstV has high genetic diversity and has
been classified into five genetic lineages, ...