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Pantograph: A template-based method for genome-scale metabolic model reconstruction
(Imperial College Press, 2015)
Genome-scale metabolic models are a powerful tool to study the inner workings of biological
systems and to guide applications. The advent of cheap sequencing has brought the opportunity to
create metabolic maps of ...
Genome-scale reconstruction of Salinispora tropica CNB-440 metabolism to study strain-specific adaptation
(Springer, 2015)
The first manually curated genome-scale metabolic model for Salinispora tropica strain CNB-440 was constructed. The reconstruction enables characterization of the metabolic capabilities for understanding and modeling the ...
From reconstruction to C4 metabolic engineering: A case study for overproduction of polyhydroxybutyrate in bioenergy grasses
(Elsevier Ireland Ltd, 2018)
© 2018 The compartmentalization of C4 plants increases photosynthetic efficiency, while constraining how material and energy must flow in leaf tissues. To capture this metabolic phenomenon, a generic plant metabolic ...
From reconstruction to C-4 metabolic engineering: a case study for overproduction of polyhydroxybutyrate in bioenergy grasses
(Elsevier, 2018-08)
The compartmentalization of C-4 plants increases photosynthetic efficiency, while constraining how material and energy must flow in leaf tissues. To capture this metabolic phenomenon, a generic plant metabolic reconstruction ...
Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models.
Genome-scale metabolic models have become the tool of choice for the global analysis of microorganism metabolism, and their reconstruction has attained high standards of quality and reliability. Improvements in this area ...
Traceability, reproducibility and wiki-exploration for "a-la-carte" reconstructions of genome-scale metabolic models
(Public Library Science, 2018-05)
Genome-scale metabolic models have become the tool of choice for the global analysis of microorganism metabolism, and their reconstruction has attained high standards of quality and reliability. Improvements in this area ...
Pantograph: A Template-based Method for Genome-scale Metabolic Model Reconstruction
(2015)
Genome-scale metabolic models are a powerful tool to study the inner workings of biological systems and to guide applications. The advent of cheap sequencing has brought the opportunity to create metabolic maps of ...
Pantograph: A Template-based Method for Genome-scale Metabolic Model Reconstruction
(2015)
Genome-scale metabolic models are a powerful tool to study the inner workings of biological systems and to guide applications. The advent of cheap sequencing has brought the opportunity to create metabolic maps of ...
Metabolic reconstruction of five Malassezia genomes
(UniandesMaestría en Ciencias BiológicasFacultad de CienciasDepartamento de Biología, 2016)
Malassezia species, are lipophilic and lipid dependent, belonging to the human and animal microbiota. Usually, they are isolated from regions rich in sebaceous glands. In some individuals they have been associated with ...