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Low density genomic data for animal breeding: critical analysis and perspectives of the GoldenGate Beadxpress technology.
(Ciência Rural, Santa Maria, v. 46, n. 11, p. 2005-2011, nov. 2016., 2016)
High-throughput single nucleotide polymorphism (SNP) discovery and validation through whole-genome resequencing in Nile Tilapia (Oreochromis niloticus)
(Springer, 2020)
Nile tilapia (Oreochromis niloticus) is the second most important farmed fish in the world and a sustainable source of protein for human consumption. Several genetic improvement programs have been established for this ...
Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels
(BioMed Central, 2013-05)
Background: F2 resource populations have been used extensively to map QTL segregating between pig breeds. A limitation associated with the use of these resource populations for fine mapping of QTL is the reduced number of ...
Assessing the accuracy of imputation in the gyr breed using different SNP panels
(2021-01-01)
The aim of this study was to evaluate the accuracy of imputation in a Gyr population using two medium- density panels (Bos taurus - Bos indicus) and to test whether the inclusion of the Nellore breed increases the imputation ...
Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations
(2016)
A considerable number of single nucleotide polymorphisms (SNPs) are required to elucidate genotype-phenotype associations and determine the molecular basis of important traits. In this work, we carried out de novo SNP ...
Applicability of the SNPforID 52-plex panel for human identification and ancestry evaluation in a Brazilian population sample by next-generation sequencing
(2019-05-01)
SNP analysis is of paramount importance in forensic genetics. The development of new technologies in next-generation sequencing allowed processing a large number of markers in various samples simultaneously. Although SNPs ...
Increased accuracy of genomic predictions for growth under chronic thermal stress in rainbow trout by prioritizing variants from GWAS using imputed sequence data
(Wiley, 2021)
Through imputation of genotypes, genome-wide
association study (GWAS) and
genomic prediction (GP) using whole-genome
sequencing (WGS) data are cost-efficient
and feasible in aquaculture breeding schemes. The objective ...