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Codon usage and codon context bias in Xanthophyllomyces dendrorhous
(BioMed Central, 2015)
Background
Synonymous codons are used differentially in organisms from the three domains of life, a phenomenon referred to as codon usage bias. In addition, codon pair bias, particularly in the 3’ codon context, has also ...
Codon usage and codon context bias in xanthophyllomyces dendrorhous
(2015)
Background: Synonymous codons are used differentially in organisms from the three domains of life, a phenomenon referred to as codon usage bias. In addition, codon pair bias, particularly in the 3' codon context, has also ...
SARS-CoV-2 Codon Usage Bias Downregulates Host Expressed Genes With Similar Codon Usage
(Frontiers Media S.A., 2020-08)
Severe acute respiratory syndrome has spread quickly throughout the world and was declared a pandemic by the World Health Organization (WHO). The pathogenic agent is a new coronavirus (SARS-CoV-2) that infects pulmonary ...
Differential bicodon usage in lowly and highly abundant proteins
(PeerJ, 2017-03)
Degeneracy in the genetic code implies that different codons can encode the same amino acid. Usage preference of synonymous codons has been observed in all domains of life. There is much evidence suggesting that this bias ...
Avian coronavirus Spike Glycoprotein Ectodomain Shows a Low Codon Adaptation to Gallus gallus with Virus-Exclusive Codons in Strategic Amino Acids Positions
(SPRINGERNEW YORK, 2012)
This is a study on the Avian coronavirus IBV and chicken host-relationship from the codon usage point of view based on fifty-nine non-redundant IBV S1 sequences (nt 1-507) from strains detected worldwide and chicken ...
Whole genome analysis of codon usage in Echinococcus
(Elsevier Science, 2018-10)
The species of the genus Echinococcus are parasitic platyhelminths that cause echinococcosis and exert a global burden on public and animal health. Here we performed codon usage bias and comparative genomic analyses using ...