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Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data
(Humana Press, 2018)
The rapid increase in the availability of transcriptomics data generated by RNA sequencing represents both a challenge and an opportunity for biologists without bioinformatics training. The challenge is handling, integrating, ...
Co-expression network analysis reveals transcription factors associated to cell wall biosynthesis in sugarcane
(Plant Molecular Biology, 2017)
Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data
(FRONTIERS MEDIA SA, 2019)
Biological systems respond to environmental perturbations and to a large diversity of compounds through gene interactions, and these genetic factors comprise complex networks. In particular, a wide variety of gene co-expression ...
CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses
(BioMed Central, 2018)
Abstract
Background
The analysis of modular gene co-expression networks is a well-established method commonly used for discovering the systems-level functionality of genes. ...
CEMiTool: a Bioconductor package for performing comprehensive modular co expression analyses
(BIOMED Central, 2018)
Background: The analysis of modular gene co-expression networks is a well-established method commonly used for discovering the systems-level functionality of genes. In addition, these studies provide a basis for the discovery ...
Differential gene expression in Eucalyptus clones in response to nutrient deficiency
(2022-04-01)
We evaluated differential expression of genes in leaf and xylem tissues for three Eucalyptus clones in the field using Illumina sequencing, under four contrasting fertilization regimes: a control combining nitrogen (N), ...
A methodology to infer gene networks from spatial patterns of expression: an application to fluorescence in situ hybridization images
(Royal Society of Chemistry - RSCCambridge, 2013-07)
The proper functional development of a multicellular organism depends on an intricate network of interacting genes that are expressed in accurate temporal and spatial patterns across different tissues. Complex inhibitory ...