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Differential bicodon usage in lowly and highly abundant proteins
(PeerJ, 2017-03)
Degeneracy in the genetic code implies that different codons can encode the same amino acid. Usage preference of synonymous codons has been observed in all domains of life. There is much evidence suggesting that this bias ...
Codon usage and codon context bias in xanthophyllomyces dendrorhous
(2015)
Background: Synonymous codons are used differentially in organisms from the three domains of life, a phenomenon referred to as codon usage bias. In addition, codon pair bias, particularly in the 3' codon context, has also ...
Codon usage and codon context bias in Xanthophyllomyces dendrorhous
(BioMed Central, 2015)
Background
Synonymous codons are used differentially in organisms from the three domains of life, a phenomenon referred to as codon usage bias. In addition, codon pair bias, particularly in the 3’ codon context, has also ...
Metabolic specialization and codon preference of lignocellulolytic genes in the white rot basidiomycete ceriporiopsis subvermispora
(MDPI AG, 2020-10-20)
Ceriporiopsis subvermispora is a white-rot fungus with a high specificity towards lignin mineralization when colonizing dead wood or lignocellulosic compounds. Its lignocellulose degrading system is formed by cellulose ...
Metabolic specialization and codon preference of lignocellulolytic genes in the white rot basidiomycete ceriporiopsis subvermispora
(MDPI, 2020)
Ceriporiopsis subvermispora is a white-rot fungus with a high specificity towards lignin mineralization when colonizing dead wood or lignocellulosic compounds. Its lignocellulose degrading system is formed by cellulose ...
Bicodon bias can determine the role of synonymous SNPs in human diseases
(BioMed Central, 2017-03)
Background: For a long time synonymous single nucleotide polymorphisms were considered as silent mutations. However, nowadays it is well known that they can affect protein conformation and function, leading to altered ...
mSphere of influence: experimental evolution of RNA viruses
(American Society for Microbiology, 2020)
Gonzalo Moratorio works in the field of experimental evolution of vi-ruses. In this mSphere of Influence article, he reflects on how the papers “Virus at-tenuation by genome-scale changes in codon pair bias” by Coleman et ...