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Algebraic methods for the study of biochemical reaction networks
(American Mathematical Society, 2020)
We will concentrate on biochemical reaction networks, of interest in systems biology, in particular enzymatic networks, consisting of different types of multisite phosphorylation networks. One source of inspiration for our ...
Multistability in a prion replication interconnected cell reaction network
(International Federation of Automatic Control, 2019)
From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions
(2016-10)
The soil bacterium Pseudomonas putida is endowed with a central carbon metabolic network capable of fulfilling high demands of reducing power. This situation arises from a unique metabolic architecture that encompasses the ...
From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions
(2016-10)
The soil bacterium Pseudomonas putida is endowed with a central carbon metabolic network capable of fulfilling high demands of reducing power. This situation arises from a unique metabolic architecture that encompasses the ...
Identifiability from a few species for a class of biochemical reaction networks
(Springer, 2019-07)
Under mass-action kinetics, biochemical reaction networks give rise to polynomial autonomous dynamical systems whose parameters are often difficult to estimate. We deal in this paper with the problem of identifying the ...
Reaction Network Modeling of Complex Ecological Interactions: Endosymbiosis and Multilevel Regulation
(Hindawi Limited, 2021-08)
Endosymbiosis is a type of symbiosis where one species of microscopic scale inhabits the cell of another species of a larger scale, such that the exchange of metabolic byproducts produces mutual benefit. These benefits can ...
Complex-linear invariants of biochemical networks
(Academic Press Ltd - Elsevier Science Ltd, 2012-10)
The nonlinearities found in molecular networks usually prevent mathematical analysis of network behaviour, which has largely been studied by numerical simulation. This can lead to difficult problems of parameter determination. ...
Lower bounds for positive roots and regions of multistationarity in chemical reaction networks
(Academic Press Inc Elsevier Science, 2020-01)
Given a real sparse polynomial system, we present a general framework to find explicit coefficients for which the system has more than one positive solution. Our approach is based on the recent article by Bihan, Santos, ...
Reaction network modeling of complex ecological interactions: endosymbiosis and multilevel regulation
(Wiley-Hindawi, 2021)
Endosymbiosis is a type of symbiosis where one species of microscopic scale inhabits the cell of another species of a larger scale, such that the exchange of metabolic byproducts produces mutual benefit. These benefits can ...