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Amplicon sequencing reveals complex infection in infants congenitally infected with Trypanosoma cruzi and informs the dynamics of parasite transmission.
(Oxford University Press, 2023)
Congenital transmission of Trypanosoma cruzi is an important source of new Chagas infections worldwide. The mechanisms of congenital transmission remain poorly understood, but there is evidence that parasite factors are ...
Composition and structure of the skin microbiota of rorquals off the Eastern South Pacific
(OXFORD UNIV PRESS, 2021)
Recent advances in high-throughput sequencing have enabled the large-scale interrogation of microbiota in the most diverse environments, including host-associated microbiota. This has led to the recognition that the skin ...
The Bias Associated with Amplicon Sequencing Does Not Affect the Quantitative Assessment of Bacterial Community Dynamics
(Public Library of Science, 2014-06)
The performance of two sets of primers targeting variable regions of the 16S rRNA gene V1-V3 and V4 was compared in their ability to describe changes of bacterial diversity and temporal turnover in full-scale activated ...
16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
(Elsevier Inc, 2020-10)
We provide a 16S rRNA gene dataset of prokaryotic assemblages of a subantarctic marine ecosystem. Samples were collected at 2 stations (one near Ushuaia Bay and the other close to Bridges islands in the Beagle Channel). ...
Data analysis for 16S microbial profiling from different benchtop sequencing platforms
(Journal of Microbiological Methods, 2018)
Herpes simplex virus type 1-based amplicon vectors for fundamental research in neurosciences and gene therapy of neurological diseases
(Elsevier, 2012-01)
Somatic manipulation of the nervous system without the involvement of the germinal line appears as a powerful counterpart of the transgenic strategy. The use of viral vectors to produce specific, transient and localized ...
Amplicon metagenomic analysis of fungi from Antarctic Terrestrial habitats
(Frontiers Media, 2017)
In cold environments such as polar regions, microorganisms play important ecological roles, and most of our knowledge about them comes from studies of cultivable microorganisms. Metagenomic technologies are powerful tools ...
An exploration tool for quality analysis in targeted sequencing experiments
(Springer, 2015-01)
Amplicon Exome Sequencing allows focusing on exonic regions of a small group of genes. The overall aim is to inquire sequenced regions about the occurrence of mutations, single nucleotide polymorphisms, insertions and ...