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Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype
(OXFORD UNIV PRESS, 2017)
In many fruit species, including grapevine, grafting is used to improve scion productivity and quality and to adapt the plant to environmental conditions. However, the mechanisms underlying the rootstock control of scion ...
A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies
(Oxford University Press, 2017-10)
Over the last few years, RNA-seq has been used to study alterations in alternative splicing related to several diseases. Bioinformatics workflows used to perform these studies can be divided into two groups, those finding ...
BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data
(2020)
MicroRNAs (miRNAs) are small non-coding RNAs that are key players in the regulation of gene expression. In the last decade, with the increasing accessibility of high-throughput sequencing technologies, different methods ...
An Integrative Single-cell Transcriptomic Atlas of the Post-natal Mouse Mammary Gland Allows Discovery of New Developmental Trajectories in the Luminal Compartment
(Springer/Plenum Publishers, 2021-11)
The mammary gland is a highly dynamic organ which undergoes periods of expansion, differentiation and cell death in each reproductive cycle. Partly because of the dynamic nature of the gland, mammary epithelial cells (MECs) ...
RNA-Seq analysis evidences a multiple gene responses in Caligus rogercresseyi exposed to organophosphate Azamethiphos.
(2015)
Azamethiphos is an organophosphate compound used in controlling Caligus rogercresseyi infestations in the Chilean salmon industry. The molecular target of organophosphates has traditionally been associated with ...
Identification of genes relevant for neural tube closure in SR-BI-deficient embryos using RNA-SEQ.
(2017)
Scavenger Receptor Class-B Type-1 (SR-BI) binds HDL and leads to bidirectional exchange of lipids. SR-BI is expressed exclusively in the maternal-fetal interface during early murine development. SR-BI KO embryos exhibit ...