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Large-Scale Multiplexing Permits Full-Length Transcriptome Annotation of 32 Bovine Tissues From a Single Nanopore Flow Cell
(Frontiers Media, 2021-05)
A comprehensive annotation of transcript isoforms in domesticated species is lacking. Especially considering that transcriptome complexity and splicing patterns are not wellconserved between species, this presents a ...
Integrative transcriptome analysis identifies deregulated microRNA-transcription factor networks in lung adenocarcinoma
(2016-05-17)
Herein, we aimed at identifying global transcriptome microRNA (miRNA) changes and miRNA target genes in lung adenocarcinoma. Samples were selected as training (N = 24) and independent validation (N = 34) sets. Tissues were ...
Transcriptome sequencing of Prunus sp. rootstocks roots to identify candidate genes involved in the response to root hypoxia
(Springer, 2015)
Root hypoxia in fruit trees affects growth, vegetative
development, and reproductive development, which
is reflected in low productivity, poor fruit quality, and
premature decay of trees. Using Illumina Hiseq2000, we ...
Interdependency of regulatory effects of iron and riboflavin in the foodborne pathogen Shigella flexneri determined by integral transcriptomics
(PeerJ, 2020)
Shigella flexneri is the causative agent of dysentery. For pathogens, iron is a critical
micronutrient as its bioavailability is usually low in bacterial niches. This metal is involved in critical physiological processes ...
Genetic potential of the biocontrol agent pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 unraveled by genome sequencing and mining, comparative genomics and transcriptomics
(MDPI AG, 2019-08-09)
The genus Pseudomonas comprises many known plant-associated microbes with plant growth promotion and disease suppression properties. Genome-based studies allow the prediction of the underlying mechanisms using genome mining ...