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IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
(BioMed Central Ltd., 2016-12-16)
Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and often result in sub-optimal data usage. Here we present IMP, a reproducible and modular pipeline for the integrated and ...
Characterization of grapevine wood microbiome through a metatranscriptomic approach
(Springer, 2021-06-30)
Grapevine trunk diseases threaten wine and table grape production worldwide, primarily by reducing yields and, in its
advanced stages, causing plant death. Among those diseases, the complex etiology disease known as hoja ...
Meta-transcriptome Profiling of the Human-Leishmania braziliensis Cutaneous Lesion
(Public Library of Science, 2017)
A Combined Metagenomics and Metatranscriptomics Approach to Unravel Costa Rican Cocoa Box Fermentation Processes Reveals Yet Unreported Microbial Species and Functionalities
(Frontiers Media, 2021-02-16)
Cocoa fermentation is the first step in the post-harvest processing chain of cocoa and is important for the removal of the cocoa pulp surrounding the beans and the development of flavor and color precursors. In the present ...
Avance en el estudio del microbioma de garrapatas: una visión hologenómica en busca de nuevas estrategias para su control
(Universidad La Salle México, Dirección de Posgrado e Investigación, 2021-11-10)
Las garrapatas son artrópodos ectoparásitos hematófagos que transmiten diversos agentes infecciosos, incluyendo bacterias que afectan al ser humano y otros animales, y cuyas enfermedades generan pérdidas económicas ...
Illuminating the Plant Rhabdovirus Landscape through Metatranscriptomics Data
(MDPI, 2021-07-05)
Rhabdoviruses infect a large number of plant species and cause significant crop diseases. They have a negative-sense, single-stranded unsegmented or bisegmented RNA genome. The number of plant-associated rhabdovirid sequences ...
Functional exploration of natural product metabolism and metatranscriptomic analyses in uncultivated soil bacteria from the Talabre-Lejía transect (Atacama desert)
(Universidad de Chile, 2022)
Soils are heterogeneous and complex environments, and bacterial competition, cooperation,
and communication dynamics there are mediated through the secretion of natural products
(NPs) synthesized in specialized pathways ...
Diurnal Changes in Active Carbon and Nitrogen Pathways Along the Temperature Gradient in Porcelana Hot Spring Microbial Mat
(2018)
Composition, carbon and nitrogen uptake, and gene transcription of microbial mat communities in Porcelana neutral hot spring (Northern Chilean Patagonia) were analyzed using metagenomics, metatranscriptomics and isotopically ...