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Enterococcus faecalis reconfigures its gene regulatory network activation under copper exposure
(2014)
A global transcriptional regulatory network was generated in the pathogenic bacterium Enterococcus faecalis in order to understand how this organism can activate and coordinate its expression at different copper concentrations. ...
Inference of Gene Regulatory Networks based on Association Rules
(Wiley, 2013)
This chapter focuses on gene regulation and the ways that transcriptome data can be used to unravel the complex relationships between the genes that comprise a gene regulatory network (GRN). In particular, it describes the ...
Reconstructing and assessing corynebacterial gene regulatory networks
(Universidade Federal de Minas GeraisBrasilICB - INSTITUTO DE CIÊNCIAS BIOLOGICASPrograma de Pós-Graduação em BioinformaticaUFMG, 2021-05-26)
The Corynebacterium genus is a very heterogeneous group of organisms of biotechnological,
medical and veterinary relevance. Its diversity allows its organisms to live in a wide range of
environments. The organisms must ...
GeRNet: A Gene Regulatory Network Tool
(Elsevier, 2017-08)
Gene regulatory networks (GRNs) are crucial in every process of life since they govern the majority of the molecular processes. Therefore, the task of assembling these networks is highly important. In particular, the so ...
Inferring Contagion in Regulatory Networks
(IEEE COMPUTER SOC, 2011)
Several gene regulatory network models containing concepts of directionality at the edges have been proposed. However, only a few reports have an interpretable definition of directionality. Here, differently from the ...
Reconstruction of a Gene Regulatory Network of the Induced Systemic Resistance Defense Response in Arabidopsis using Boolean Networks
(2020)
Background: An important process for plant survival is the immune system. The induced systemic resistance (ISR) triggered by beneficial microbes is an important cost-effective defense mechanism by which plants are primed ...
Coarse-grain reconstruction of genetic networks from expression levels
(Elsevier Science, 2011-06)
In the postgenome era many efforts have been dedicated to systematically elucidate the complex web of interacting genes and proteins. These efforts include experimental and computational methods. Microarray technology ...