Buscar
Mostrando ítems 1-10 de 221
Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)
(Wiley Blackwell Publishing, Inc, 2022-02)
We discuss here the use of TNT (Tree Analysis using New Technology) for phylogenomic analysis. For such data, parsimony is a useful alternative to model-based analyses, which frequently utilize models that make unrealistic ...
Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution
(2021)
Recent phylogenomic analyses based on the maternally inherited plastid organelle have enlightened evolutionary relationships between the subfamilies of Orchidaceae and most of the tribes. However, uncertainty remains within ...
Analysis of ultraconserved elements supports African origins of narrow-mouthed frogs
(ScienceDirectRegularMolecular Phylogenetics and Evolution, 2020)
Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
(BioMed Central, 2016-06)
Background: Panicoideae are the second largest subfamily in Poaceae (grass family), with 212 genera and approximately 3316 species. Previous studies have begun to reveal relationships within the subfamily, but largely lack ...
Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales
(MDPI AG, 2019-02-13)
Dual flagellar systems have been described in several bacterial genera, but the extent of their prevalence has not been fully explored. Bradyrhizobium diazoefficiens USDA 110T possesses two flagellar systems, the subpolar ...
Phylogenomic analysis of lactobacillus curvatus reveals two lineages distinguished by genes for fermenting plant-derived carbohydrates
(Oxford University Press, 2018-06)
Lactobacillus curvatus is a lactic acid bacterium encountered in many different types of fermented food (meat, seafood, vegetables, and cereals). Although this species plays an important role in the preservation of these ...
Phylogenomics from Whole Genome Sequences Using aTRAM
(Oxford University Press, 2017-03-06)
Novel sequencing technologies are rapidly expanding the size of data sets that can be applied to phylogenetic studies. Currently the most commonly used phylogenomic approaches involve some form of genome reduction. While ...