Artículos de revistas
Castanea Root Transcriptome In Response To Phytophthora Cinnamomi Challenge
Tree Genetics And Genomes. Springer Verlag, v. 11, n. 1, p. 1 - 19, 2014.
The European chestnut, an important forest species for the economy of Southern Europe, covers an area of 2.53 million hectares, including 75,000 ha devoted to fruit production. Castanea sativa is declining due to ink disease caused by Phytophthora cinnamomi. To elucidate chestnut defense mechanisms to ink disease, we compared the root transcriptome of the susceptible species C. sativa and the resistant species C. crenata after P. cinnamomi inoculation. Four cDNA libraries were constructed, two of them included root samples from C. sativa, inoculated and non-inoculated and the other two libraries comprised samples from C. crenata at identical conditions. Pyrosequencing produced 771,030 reads and assembly set up 15,683 contigs for C. sativa and 16,828 for C. crenata. GO annotation revealed terms related to stress as “response to stimulus”, “transcription factor activity” or “signaling” for both transcriptomes. Differential gene expression analysis revealed that C. crenata involved more genes related with biotic stress upon pathogen inoculation than C. sativa. Those genes for both species are involved in regulation of plant immune response and stress adaptation and recovery. Furthermore, it is suggested that both species recognize the pathogen attack; however, the resistant species may involve more genes in the defense response than the susceptible species. RNA-seq enabled the selection of candidate genes for ink disease resistance in Castanea. The present data is a valuable contribution to the available Castanea genomic resources and constitutes the basis for further studies.111119FCT; Fundação para a Ciência e a TecnologiaAnagnostakis, S.L., The effect of multiple importations of pests and pathogens on a native tree (2001) Biol Invasions, 3, pp. 245-254Barakat, A., DiLoreto, D.S., Zhang, Y., Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection (2009) BMC Plant Biol, 9, p. 51. , PID: 19426529Barakat, A., Staton, M., Cheng, C.-H., Chestnut resistance to the blight disease: insights from transcriptome analysis (2012) BMC Plant Biol, 12, p. 38. , COI: 1:CAS:528:DC%2BC38XpsVWguro%3D, PID: 22429310Bari, R., Jones, J.D.G., Role of plant hormones in plant defence responses (2009) Plant Mol Biol, 69, pp. 473-488. , COI: 1:CAS:528:DC%2BD1MXhvVOisLs%3D, PID: 19083153Belchí-Navarro, S., Almagro, L., Sabater-Jara, A.B., Induction of trans-resveratrol and extracellular pathogenesis-related proteins in elicited suspension cultured cells of Vitis vinifera cv Monastrell (2013) J Plant Physiol, 170, pp. 258-264. , PID: 23127362Benhamou, N., Mazau, D., Grenier, J., Esquerré-Tugayé, M.-T., Time-course study of the accumulation of hydroxyproline-rich glycoproteins in root cells of susceptible and resistant tomato plants infected by Fusarium oxysporum f. sp. radicis-lycopersici (1991) Planta, 184, pp. 196-208. , COI: 1:CAS:528:DyaK3MXkt1Kis70%3D, PID: 24194071Bocca, S.N., Kissen, R., Rojas-Beltrán, J.A., Molecular cloning and characterization of the enzyme UDP-glucose: protein transglucosylase from potato (1999) Plant Physiol Biochem, 37, pp. 809-819. , COI: 1:CAS:528:DC%2BD3cXlsFequw%3D%3D, PID: 10580281Bouché, N., Fromm, H., GABA in plants: just a metabolite? (2004) Trends Plant Sci, 9, pp. 110-115. , PID: 15003233Brasier, C.M., Jung, T., Recent developments in Phytophthora diseases of trees and natural ecosystems in Europe. Prog (2006) Res. Phytophthora Dis. For. Trees. Proceedings, 3rd Int. IUFRO Work. Party, pp. 5-16Broeckling, C.D., Huhman, D.V., Farag, M.A., Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism (2005) J Exp Bot, 56, pp. 323-336. , COI: 1:CAS:528:DC%2BD2MXkt1WltA%3D%3D, PID: 15596476Cantu, D., Vicente, A.R., Labavitch, J.M., Strangers in the matrix: plant cell walls and pathogen susceptibility (2008) Trends Plant Sci, 13, pp. 610-617. , COI: 1:CAS:528:DC%2BD1cXhtlartL7J, PID: 18824396Chen, K., Fan, B., Du, L., Chen, Z., Activation of hypersensitive cell death by pathogen-induced receptor-like protein kinases from Arabidopsis (2004) Plant Mol Biol, 56, pp. 271-283. , COI: 1:CAS:528:DC%2BD2MXhtVeksw%3D%3D, PID: 15604743Chung, E., Park, J.M., Oh, S.-K., Molecular and biochemical characterization of the Capsicum annuum calcium-dependent protein kinase 3 (CaCDPK3) gene induced by abiotic and biotic stresses (2004) Planta, 220, pp. 286-295. , COI: 1:CAS:528:DC%2BD2cXhtVensrfI, PID: 15449060Coelho, A.C., Horta Jung, M., Ebadzad, G., Cravador, A., Quercus suber–Phytophthora cinnamomi interaction: a hypothetical molecular mechanism model (2011) N Z J For Sci, 41S, pp. S143-S157Conesa, A., Götz, S., Blast2GO: a comprehensive suite for functional analysis in plant genomics (2008) Int J Plant GenomCosta, R., Santos, C., Tavares, F., Mapping and transcriptomic approaches implemented for understanding disease resistance to Phytophthora cinammomi in Castanea sp (2011) BMC Proc, 5, p. O18Dhondt, S., Geoffroy, P., Stelmach, B.A., Soluble phospholipase A2 activity is induced before oxylipin accumulation in tobacco mosaic virus-infected tobacco leaves and is contributed by patatin-like enzymes (2000) Plant J, 23, pp. 431-440. , COI: 1:CAS:528:DC%2BD3cXms1eht7s%3D, PID: 10972869Diévart, A., Clark, S.E., Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases (2003) Curr Opin Plant Biol, 6, pp. 507-516. , PID: 12972053Dixon, R.A., Paiva, N.L., Stress-induced phenylpropanoid metabolism (1995) Plant Cell, 7, pp. 1085-1097. , COI: 1:CAS:528:DyaK2MXnt1Sgt7k%3D, PID: 12242399Eshraghi, L., Anderson, J.P., Aryamanesh, N., Defence signalling pathways involved in plant resistance and phosphite-mediated control of Phytophthora cinnamomi (2013) Plant Mol Biol Report, 32, pp. 342-356Feng, B., Li, P., Genome-wide identification of laccase gene family in three Phytophthora species (2012) Genetica, 140, pp. 477-484. , COI: 1:CAS:528:DC%2BC3sXitFagtr8%3D, PID: 23283515Fernandes, C.T., A luta contra a doença da tinta nos soutos do norte de Portugal e ensaios diversos para a sua maior eficiência e economia (1955) Direcção-G, p. 61Foster, J., Kim, H.U., Nakata, P.A., Browse, J., A previously unknown oxalyl-CoA synthetase is important for oxalate catabolism in Arabidopsis (2012) Plant Cell, 24, pp. 1217-1229. , COI: 1:CAS:528:DC%2BC38Xmsl2jtLg%3D, PID: 22447686García-Pineda, E., Benezer-Benezer, M., Gutiérrez-Segundo, A., Regulation of defence responses in avocado roots infected with Phytophthora cinnamomi (Rands) (2009) Plant Soil, 331, pp. 45-56Giri, J., Vij, S., Dansana, P.K., Tyagi, A.K., Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants (2011) New Phytol, 191 (3), pp. 721-732Gouzy, J., Carrere, S., Schiex, T., FrameDP: sensitive peptide detection on noisy matured sequences (2009) Bioinformatics, 25, pp. 670-671. , COI: 1:CAS:528:DC%2BD1MXisFeks7o%3D, PID: 19153134Hammond-Kosack, K.E., Jones, J.D., Resistance gene-dependent plant defense responses (1996) Plant Cell, 8, pp. 1773-1791. , COI: 1:CAS:528:DyaK28Xmsl2mtbY%3D, PID: 8914325Hammond-Kosack, K.E., Jones, J.D.G., Plant disease resistance genes (1997) Annu Rev Plant Physiol Plant Mol Biol, 48, pp. 575-607. , COI: 1:CAS:528:DyaK2sXjs1elsr0%3D, PID: 15012275Hartmann, U., Sagasser, M., Mehrtens, F., Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes (2005) Plant Mol Biol, 57, pp. 155-171. , COI: 1:CAS:528:DC%2BD2MXjtV2hu7Y%3D, PID: 15821875He, X., Miyasaka, S.C., Fitch, M.M.M., Taro (Colocasia esculenta) transformed with a wheat oxalate oxidase gene for improved resistance to taro pathogen Phytophthora colocasiae (2013) HortSci, 48, pp. 22-27. , COI: 1:CAS:528:DC%2BC3sXislyjtbc%3DHenriksson, E., Olsson, A.S.B., Johannesson, H., Homeodomain leucine zipper class I genes in Arabidopsis. Expression patterns and phylogenetic relationships (2005) Plant Physiol, 139, pp. 509-518. , COI: 1:CAS:528:DC%2BD2MXhtVCgurrE, PID: 16055682Hondo, D., Hase, S., Kanayama, Y., The LeATL6-associated ubiquitin/proteasome system may contribute to fungal elicitor-activated defense response via the jasmonic acid-dependent signaling pathway in tomato (2007) Mol Plant Microbe Interact, 20, pp. 72-81. , COI: 1:CAS:528:DC%2BD2sXlvFE%3D, PID: 17249424Hu, X., Neill, S., Cai, W., Tang, Z., Hydrogen peroxide and jasmonic acid mediate oligogalacturonic acid-induced saponin accumulation in suspension-cultured cells of Panax ginseng (2003) Physiol Plant, 118, pp. 414-421. , COI: 1:CAS:528:DC%2BD3sXlsVSisLg%3DHunter, S., Apweiler, R., Attwood, T.K., InterPro: the integrative protein signature database (2009) Nucleic Acids Res, 37, pp. D211-D215. , COI: 1:CAS:528:DC%2BD1cXhsFejtL%2FF, PID: 18940856Irshad, M., Canut, H., Borderies, G., A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers (2008) BMC Plant Biol, 8, p. 94. , PID: 18796151Jabs, T., Dietrich, R.A., Dangl, J.L., Initiation of runaway cell death in an Arabidopsis mutant by extracellular superoxide (1996) Science, 273, pp. 1853-1856. , COI: 1:CAS:528:DyaK28XlvFCrsLk%3D, PID: 8791589, 80-Jackson, D., Culianez-Macia, F., Prescott, A.G., Expression patterns of myb genes from Antirrhinum flowers (1991) Plant Cell, 3, pp. 115-125. , COI: 1:CAS:528:DyaK38Xhs1Cnsg%3D%3D, PID: 1840903Jacobs, D.F., Dalgleish, H.J., Nelson, C.D., A conceptual framework for restoration of threatened plants: the effective model of American chestnut (Castanea dentata) reintroduction (2013) New Phytol, 197, pp. 378-393. , PID: 23163342Jiang, N., Xiao, D., Zhang, D., Negative roles of a novel nitrogen metabolite repression-related gene, TAR1, in laccase production and nitrate utilization by the basidiomycete Cryptococcus neoformans (2009) Appl Environ Microbiol, 75, pp. 6777-6782. , COI: 1:CAS:528:DC%2BD1MXhsVGrsrfP, PID: 19734333Kamoun, S., Huitema, E., Vleeshouwers, V., Resistance to oomycetes: a general role for the hypersensitive response? (1999) Trends Plant Sci, 4, pp. 196-200. , PID: 10322560Keinänen, S.I., Hassinen, V.H., Kärenlampi, S.O., Tervahauta, A.I., Isolation of genes up-regulated by copper in a copper-tolerant birch (Betula pendula) clone (2007) Tree Physiol, 27, pp. 1243-1252. , PID: 17545124Langmead, B., Hansen, K.D., Leek, J.T., Cloud-scale RNA-sequencing differential expression analysis with Myrna (2010) Genome Biol, 11, p. R83. , PID: 20701754Latijnhouwers, M., de Wit, P.J.G.M., Govers, F., Oomycetes and fungi: similar weaponry to attack plants (2003) Trends Microbiol, 11, pp. 462-469. , COI: 1:CAS:528:DC%2BD3sXnvFWjtr8%3D, PID: 14557029Le Provost, G., Herrera, R., Paiva, J.A., A micromethod for high throughput RNA extraction in forest trees (2007) Biol Res, 40, pp. 291-297. , PID: 18449457Leivar, P., Antolín-Llovera, M., Ferrero, S., Multilevel control of Arabidopsis 3-hydroxy-3-methylglutaryl coenzyme A reductase by protein phosphatase 2A (2011) Plant Cell, 23, pp. 1494-1511. , COI: 1:CAS:528:DC%2BC3MXnsl2lurc%3D, PID: 21478440Li, G., Liu, K., Baldwin, S.A., Wang, D., Equilibrative nucleoside transporters of Arabidopsis thaliana. cDNA cloning, expression pattern, and analysis of transport activities (2003) J Biol Chem, 278, pp. 35732-35742. , COI: 1:CAS:528:DC%2BD3sXntVajsbg%3D, PID: 12810710Lin, R.-C., Park, H.-J., Wang, H.-Y., Role of Arabidopsis RAP2.4 in regulating light- and ethylene-mediated developmental processes and drought stress tolerance (2008) Mol Plant, 1 (1), pp. 42-57Lingard, M.J., Bartel, B., Arabidopsis LON2 is necessary for peroxisomal function and sustained matrix protein import (2009) Plant Physiol, 151, pp. 1354-1365. , COI: 1:CAS:528:DC%2BD1MXhsVCjsbjF, PID: 19748917Liu, X., Bush, D.R., Expression and transcriptional regulation of amino acid transporters in plants (2006) Amino Acids, 30, pp. 113-120. , PID: 16525755Livak, K.J., Schmittgen, T.D., Analysis of relative gene expression data using real-time quantitative PCR and the 2(−Delta Delta C(T)) Method (2001) Methods, 25, pp. 402-408. , COI: 1:CAS:528:DC%2BD38XhtFelt7s%3D, PID: 11846609López-Marqués, R.L., Poulsen, L.R., Palmgren, M.G., A putative plant aminophospholipid flippase, the Arabidopsis P4 ATPase ALA1, localizes to the plasma membrane following association with a β-subunit (2012) PLoS ONE, 7, p. e33042. , PID: 22514601Lottaz, C., Iseli, C., Jongeneel, C.V., Bucher, P., Modeling sequencing errors by combining Hidden Markov models (2003) Bioinformatics, 19, pp. ii103-ii112. , PID: 14534179Marshall, S.D.G., Putterill, J.J., Plummer, K.M., Newcomb, R.D., The carboxylesterase gene family from Arabidopsis thaliana (2003) J Mol Evol, 57, pp. 487-500. , COI: 1:CAS:528:DC%2BD3sXpt1Oltb0%3D, PID: 14738307Marsolais, F., Boyd, J., Paredes, Y., Molecular and biochemical characterization of two brassinosteroid sulfotransferases from Arabidopsis, AtST4a (At2g14920) and AtST1 (At2g03760) (2007) Planta, 225, pp. 1233-1244. , COI: 1:CAS:528:DC%2BD2sXjtVWjs7w%3D, PID: 17039368Martins, L., Anjos, R., Costa, R., Gomes-Laranjo, J., Gomes-Laranjo, J., Peixoto, F., Ferreira-Cardoso, J., COLUTAD: um clone de castanheiro resistente à doença da tinta (2009) Castanheiros, Técnicas e Práticas, pp. 135-142. , UTAD - Vil, Vila Real:Meyer, F., Paarmann, D., D’Souza, M., The metagenomics RAST server—a public resource for the automatic phylogenetic and functional analysis of metagenomes (2008) BMC Bioinforma, 9, p. 386. , COI: 1:CAS:528:DC%2BD1cXhtlGjsrbMMutuku, J.M., Nose, A., Changes in the contents of metabolites and enzyme activities in rice plants responding to Rhizoctonia solani Kuhn infection: activation of glycolysis and connection to phenylpropanoid pathway (2012) Plant Cell Physiol, 53, pp. 1017-1032. , COI: 1:CAS:528:DC%2BC38XotlelsL0%3D, PID: 22492233Nakane, E., Kawakita, K., Doke, N., Yoshioka, H., Elicitation of primary and secondary metabolism during defense in the potato (2003) J Gen Plant Pathol, 69, pp. 378-384. , COI: 1:CAS:528:DC%2BD2cXhvFegtbc%3DNdamukong, I., Al Abdallat, A., Thurow, C., SA-inducible Arabidopsis glutaredoxin interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription (2007) Plant J, 50, pp. 128-139. , COI: 1:CAS:528:DC%2BD2sXkvFSmtrw%3D, PID: 17397508Niu, B., Fu, L., Sun, S., Li, W., Artificial and natural duplicates in pyrosequencing reads of metagenomic data (2010) BMC Bioinforma, 11, p. 187Ohta, M., Matsui, K., Hiratsu, K., Repression domains of class II ERF transcriptional repressors share an essential motif for active repression (2001) Plant Cell, 13, pp. 1959-1968. , COI: 1:CAS:528:DC%2BD3MXmsFKhsrw%3D, PID: 11487705Oßwald, W., Fleischmann, F., Rigling, D., Strategies of attack and defence in woody plant- Phytophthora interactions. For Pathol 44:n/a–n/a (2014) doi: 10.1111/efp.12096Porta, H., Rocha-Sosa, M., Plant lipoxygenases. Physiological and molecular features (2002) Plant Physiol, 130, pp. 15-21. , COI: 1:CAS:528:DC%2BD38XntFOrsL0%3D, PID: 12226483Reeksting, B.J., Coetzer, N., Mahomed, W., De novo sequencing, assembly, and analysis of the root transcriptome of Persea americana (Mill.) in response to Phytophthora cinnamomi and flooding (2014) PLoS ONE, 9, p. e86399. , PID: 24563685Reimers, P.J., Guo, A., Leach, J.E., Increased activity of a cationic peroxidase associated with an incompatible interaction between Xanthomonas oryzae pv oryzae and rice (Oryza sativa) (1992) Plant Physiol, 99, pp. 1044-1050. , COI: 1:CAS:528:DyaK38XlsVOgtL8%3D, PID: 16668969Rookes, J.E., Wright, M.L., Cahill, D.M., Elucidation of defence responses and signalling pathways induced in Arabidopsis thaliana following challenge with Phytophthora cinnamomi (2008) Physiol Mol Plant Pathol, 72, pp. 151-161. , COI: 1:CAS:528:DC%2BD1cXhsVKls7fMRoppolo, D., De Rybel, B., Tendon, V.D., A novel protein family mediates Casparian strip formation in the endodermis (2011) Nature, 473, pp. 380-383. , COI: 1:CAS:528:DC%2BC3MXmtlemu78%3D, PID: 21593871Ryu, H.Y., Kim, S.Y., Park, H.M., Modulations of AtGSTF10 expression induce stress tolerance and BAK1-mediated cell death (2009) Biochem Biophys Res Commun, 379, pp. 417-422. , COI: 1:CAS:528:DC%2BD1MXotl2isw%3D%3D, PID: 19118534Sandorf, I., Holländer-Czytko, H., Jasmonate is involved in the induction of tyrosine aminotransferase and tocopherol biosynthesis in Arabidopsis thaliana (2002) Planta, 216 (1), pp. 173-179Schneider, M., Droz, E., Malnoë, P., Transgenic potato plants expressing oxalate oxidase have increased resistance to oomycete and bacterial pathogens (2002) Potato Res, 45, pp. 177-185. , COI: 1:CAS:528:DC%2BD2MXltlWitLc%3DSchneider, K., Kienow, L., Schmelzer, E., A new type of peroxisomal acyl-coenzyme A synthetase from Arabidopsis thaliana has the catalytic capacity to activate biosynthetic precursors of jasmonic acid (2005) J Biol Chem, 280, pp. 13962-13972. , COI: 1:CAS:528:DC%2BD2MXivV2rsrs%3D, PID: 15677481Schopfer, C.R., Ebel, J., Identification of elicitor-induced cytochrome P450s of soybean (Glycine max L.) using differential display of mRNA (1998) Mol Gen Genet, 258, pp. 315-322. , COI: 1:CAS:528:DyaK1cXjvF2iu7g%3D, PID: 9648734Sharma, M., Chai, C., Morohashi, K., Expression of flavonoid 3’-hydroxylase is controlled by P1, the regulator of 3-deoxyflavonoid biosynthesis in maize (2012) BMC Plant Biol, 12, p. 196. , COI: 1:CAS:528:DC%2BC3sXhtlGitrw%3D, PID: 23113982Shoji, T., Hashimoto, T., Tobacco MYC2 regulates jasmonate-inducible nicotine biosynthesis genes directly and by way of the NIC2-locus ERF genes (2011) Plant Cell Physiol, 52, pp. 1117-1130. , COI: 1:CAS:528:DC%2BC3MXnsFWktrw%3D, PID: 21576194Singh, A.K., Sharma, V., Pal, A.K., Genome-wide organization and expression profiling of the NAC transcription factor family in potato (Solanum tuberosum L.) (2013) DNA Res, 20, pp. 403-423. , COI: 1:CAS:528:DC%2BC3sXht1CktrrN, PID: 23649897Sivasankar, S., Expression of allene oxide synthase determines defense gene activation in tomato (2000) Plant Physiol, 122, pp. 1335-1342. , COI: 1:CAS:528:DC%2BD3cXktFWjsrw%3D, PID: 10759530Storey, J.D., Tibshirani, R., Statistical significance for genomewide studies (2003) Proc Natl Acad Sci U S A, 100, pp. 9440-9445. , COI: 1:CAS:528:DC%2BD3sXmtlyktbY%3D, PID: 12883005Subroto, T., de Vries, H., Schuringa, J.J., Enzymic and structural studies on processed proteins from the vacuolar (lutoid-body) fraction of latex of Hevea brasiliensis (2001) Plant Physiol Biochem, 39, pp. 1047-1055. , COI: 1:CAS:528:DC%2BD3MXpt1arurc%3DSun, G., Yang, Y., Xie, F., Deep sequencing reveals transcriptome re-programming of Taxus × media cells to the elicitation with methyl jasmonate (2013) PLoS ONE, 8, p. e62865. , COI: 1:CAS:528:DC%2BC3sXnsVKhu7Y%3D, PID: 23646152Szczesna-Skorupa, E., Kemper, B., BAP31 is involved in the retention of cytochrome P450 2C2 in the endoplasmic reticulum (2006) J Biol Chem, 281 (7), pp. 4142-4148Taki, N., Sasaki-Sekimoto, Y., Obayashi, T., 12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis (2005) Plant Physiol, 139, pp. 1268-1283. , COI: 1:CAS:528:DC%2BD2MXht1Ogu7%2FE, PID: 16258017Tan, S.-K., Kamada, H., Initial identification of a phosphoprotein that appears to be involved in the induction of somatic embryogenesis in carrot (2000) Plant Cell Rep, 19, pp. 739-747. , COI: 1:CAS:528:DC%2BD3cXksFGhsLY%3DThomma, B.P.H.J., Separate jasmonate-dependent and salicylate-dependent defense-response pathways in Arabidopsis are essential for resistance to distinct microbial pathogens (1998) Proc Natl Acad Sci, 95, pp. 15107-15111. , COI: 1:CAS:528:DyaK1cXotVGlsLc%3D, PID: 9844023Torres, M.A., Dangl, J.L., Jones, J.D.G., Arabidopsis gp91phox homologues AtrbohD and AtrbohF are required for accumulation of reactive oxygen intermediates in the plant defense response (2002) Proc Natl Acad Sci U S A, 99, pp. 517-522. , COI: 1:CAS:528:DC%2BD38Xlt1CqsQ%3D%3D, PID: 11756663Vannini, A., Vettraino, A.M., Ink disease in chestnuts: impact on the European chestnut (2001) For Snow Landsc Res, 76, pp. 345-350Vellosillo, T., Martínez, M., López, M.A., Oxylipins produced by the 9-lipoxygenase pathway in Arabidopsis regulate lateral root development and defense responses through a specific signaling cascade (2007) Plant Cell, 19, pp. 831-846. , COI: 1:CAS:528:DC%2BD2sXltFyqurw%3D, PID: 17369372Vlad, F., Spano, T., Vlad, D., Involvement of Arabidopsis prolyl 4 hydroxylases in hypoxia, anoxia and mechanical wounding (2007) Plant Signal Behav, 2, pp. 368-369. , PID: 19704601Vleeshouwers, V.G., van Dooijeweert, W., Govers, F., The hypersensitive response is associated with host and nonhost resistance to Phytophthora infestans (2000) Planta, 210, pp. 853-864. , COI: 1:CAS:528:DC%2BD3cXjtVWrtrg%3D, PID: 10872215Wen, B., Ström, A., Tasker, A., Effect of silencing the two major tomato fruit pectin methylesterase isoforms on cell wall pectin metabolism (2013) Plant Biol (Stuttg)Woo, H.-H., Jeong, B.R., Hirsch, A.M., Hawes, M.C., Characterization of Arabidopsis AtUGT85A and AtGUS gene families and their expression in rapidly dividing tissues (2007) Genomics, 90, pp. 143-153. , COI: 1:CAS:528:DC%2BD2sXmsFahsb4%3D, PID: 17498920Yang, B., Jiang, Y., Rahman, M.H., Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments (2009) BMC Plant Biol, 9, p. 68. , PID: 19493335Yang, Y., He, M., Zhu, Z., Identification of the dehydrin gene family from grapevine species and analysis of their responsiveness to various forms of abiotic and biotic stress (2012) BMC Plant Biol, 12, p. 140. , COI: 1:CAS:528:DC%2BC38Xhslals7zK, PID: 22882870Yazaki, K., ABC transporters involved in the transport of plant secondary metabolites (2006) FEBS Lett, 580, pp. 1183-1191. , COI: 1:CAS:528:DC%2BD28XhtFejur4%3D, PID: 16364309Yokoyama, R., Nishitani, K., A comprehensive expression analysis of all members of a gene family encoding cell-wall enzymes allowed us to predict cis-regulatory regions involved in cell-wall construction in specific organs of Arabidopsis (2001) Plant Cell Physiol, 42, pp. 1025-1033. , COI: 1:CAS:528:DC%2BD3MXnvV2ksbs%3D, PID: 11673616Zhang, B., Singh, K.B., ocs element promoter sequences are activated by auxin and salicylic acid in Arabidopsis (1994) Proc Natl Acad Sci U S A, 91, pp. 2507-2511. , COI: 1:CAS:528:DyaK2cXjtFOisL0%3D, PID: 8146146Zhang, J., Addepalli, B., Yun, K.-Y., A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana (2008) PLoS ONE, 3, p. e2410. , PID: 18545667Zhang, J., Peng, Y., Guo, Z., Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants (2008) Cell Res, 18, pp. 508-521. , COI: 1:CAS:528:DC%2BD1cXktFCksro%3D, PID: 18071364Zhang, B., Oakes, A.D., Newhouse, A.E., A threshold level of oxalate oxidase transgene expression reduces Cryphonectria parasitica-induced necrosis in a transgenic American chestnut (Castanea dentata) leaf bioassay (2013) Transgenic ResZhu, Z., An, F., Feng, Y., Derepression of ethylene-stabilized transcription factors (EIN3/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis (2011) Proc Natl Acad Sci U S A, 108, pp. 12539-12544. , COI: 1:CAS:528:DC%2BC3MXpvFSjsbc%3D, PID: 21737749