The Global Durum wheat Panel (GDP): an international platform to identify and exchange beneficial alleles

dc.creatorMazzucotelli, E.
dc.creatorSciara, G.
dc.creatorMastrangelo, A.M.
dc.creatorDesiderio, F.
dc.creatorXu, S.
dc.creatorFaris, J.
dc.creatorHayden, M.
dc.creatorTricker, P.J.
dc.creatorOzkan, H.
dc.creatorEchenique, V.
dc.creatorSteffenson, B.J.
dc.creatorKnox, R.
dc.creatorNiane, A.A.
dc.creatorUdupa, S. M.
dc.creatorLongin, C.F.H.
dc.creatorMarone, D.
dc.creatorPetruzzino, G.
dc.creatorCorneti, S.
dc.creatorOrmanbekova, D.
dc.creatorPozniak, C.J.
dc.creatorRoncallo, P.F.
dc.creatorMather, D.E.
dc.creatorAble, J.A.
dc.creatorAmri, A.
dc.creatorBraun, H.J.
dc.creatorAmmar, K.
dc.creatorBaum, M.
dc.creatorCattivelli, L.
dc.creatorMaccaferri, M.
dc.creatorTuberosa, R.
dc.creatorBassi, F.
dc.date2021-01-14T01:20:13Z
dc.date2021-01-14T01:20:13Z
dc.date2020
dc.date.accessioned2023-07-17T20:06:39Z
dc.date.available2023-07-17T20:06:39Z
dc.identifierhttps://hdl.handle.net/10883/21116
dc.identifier10.3389/fpls.2020.569905
dc.identifier.urihttps://repositorioslatinoamericanos.uchile.cl/handle/2250/7512902
dc.descriptionRepresentative, broad and diverse collections are a primary resource to dissect genetic diversity and meet pre-breeding and breeding goals through the identification of beneficial alleles for target traits. From 2,500 tetraploid wheat accessions obtained through an international collaborative effort, a Global Durum wheat Panel (GDP) of 1,011 genotypes was assembled that captured 94–97% of the original diversity. The GDP consists of a wide representation of Triticum turgidum ssp. durum modern germplasm and landraces, along with a selection of emmer and primitive tetraploid wheats to maximize diversity. GDP accessions were genotyped using the wheat iSelect 90K SNP array. Among modern durum accessions, breeding programs from Italy, France and Central Asia provided the highest level of genetic diversity, with only a moderate decrease in genetic diversity observed across nearly 50 years of breeding (1970–2018). Further, the breeding programs from Europe had the largest sets of unique alleles. LD was lower in the landraces (0.4 Mbp) than in modern germplasm (1.8 Mbp) at r2 = 0.5. ADMIXTURE analysis of modern germplasm defined a minimum of 13 distinct genetic clusters (k), which could be traced to the breeding program of origin. Chromosome regions putatively subjected to strong selection pressure were identified from fixation index (Fst) and diversity reduction index (DRI) metrics in pairwise comparisons among decades of release and breeding programs. Clusters of putative selection sweeps (PSW) were identified as co-localized with major loci controlling phenology (Ppd and Vrn), plant height (Rht) and quality (gliadins and glutenins), underlining the role of the corresponding genes as driving elements in modern breeding. Public seed availability and deep genetic characterization of the GDP make this collection a unique and ideal resource to identify and map useful genetic diversity at loci of interest to any breeding program.
dc.languageEnglish
dc.publisherFrontiers
dc.relationhttps://wheat.pw.usda.gov/GG3/global_durum_genomic_resources
dc.relationhttps://wheat.triticeaetoolbox.org/breeders_toolbox/protocol/158
dc.rightsCIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose
dc.rightsOpen Access
dc.source11
dc.source1664-462X
dc.sourceFrontiers in Plant Science
dc.source569905
dc.subjectAGRICULTURAL SCIENCES AND BIOTECHNOLOGY
dc.subjectDurum Wheat
dc.subjectSelection Sweep
dc.subjectBreeding History
dc.subjectWheat Initiative
dc.subjectHARD WHEAT
dc.subjectGENETIC DIVERSITY
dc.subjectSELECTION
dc.subjectPLANT BREEDING
dc.titleThe Global Durum wheat Panel (GDP): an international platform to identify and exchange beneficial alleles
dc.typeArticle
dc.typePublished Version
dc.coverageSwitzerland


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