Development of a set of SNP markers for population genetics studies of Ipe (Handroanthus sp.), a valuable tree genus from Latin America

dc.contributorUniversidade Estadual Paulista (Unesp)
dc.contributorThunen Inst Forest Genet
dc.contributorUniv Autonoma Gabriel Rene Moreno
dc.contributorUniv Guyane
dc.contributorInst Florestal Sao Paulo
dc.contributorINRA Pierroton
dc.date.accessioned2019-10-04T12:34:45Z
dc.date.accessioned2022-12-19T18:05:54Z
dc.date.available2019-10-04T12:34:45Z
dc.date.available2022-12-19T18:05:54Z
dc.date.created2019-10-04T12:34:45Z
dc.date.issued2018-12-01
dc.identifierConservation Genetics Resources. Dordrecht: Springer, v. 10, n. 4, p. 779-781, 2018.
dc.identifier1877-7252
dc.identifierhttp://hdl.handle.net/11449/185351
dc.identifier10.1007/s12686-017-0928-5
dc.identifierWOS:000456651300042
dc.identifier.urihttps://repositorioslatinoamericanos.uchile.cl/handle/2250/5366404
dc.description.abstractA combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing was used for the development of single nucleotide polymorphisms (SNP) and INDEL (insertion/deletions) genetic markers for Ipe (Handroanthus sp.). Of the 402 putative loci identified, 389 SNPs and INDELs (315 nuclear SPNs, six chloroplast INDELs, 15 chloroplast SNPs, 12 mitochondrial INDELs and 41 mitochondrial SNPs) were successfully genotyped at 93 individuals from Brazil, Bolivia and French Guiana using a - MassARRAY (R) iPLEX (TM) platform. This set of markers will be invaluable for population genetics, phylogeography and DNA fingerprinting studies.
dc.languageeng
dc.publisherSpringer
dc.relationConservation Genetics Resources
dc.rightsAcesso aberto
dc.sourceWeb of Science
dc.subjectHandroanthus sp.
dc.subjectSingle nucleotide polymorphism
dc.subjectMassARRAY
dc.titleDevelopment of a set of SNP markers for population genetics studies of Ipe (Handroanthus sp.), a valuable tree genus from Latin America
dc.typeArtículos de revistas


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