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Comparing de novo and reference-based transcriptome assembly strategies by applying them to the blood-sucking bug Rhodnius prolixus
(Elsevier B. V., 2015-05-22)
High Throughput Sequencing capabilities have made the process of assembling a transcriptome easier, whether or not there is a reference genome. But the quality of a transcriptome assembly must be good enough to capture the ...
The transcriptome of Cryptosporidium oocysts and intracellular stages
(2019-12-01)
Human cryptosporidiosis is caused primarily by two species of apicomplexan parasites, Cryptosporidium parvum and C. hominis. Although infection of cell monolayers with sporozoites does not support the complete parasite ...
Bladder expression of CD cell surface antigens and cell-type-specific transcriptomes
(SPRINGERNEW YORK, 2013-08-02)
Many cell types have no known functional attributes. In the bladder and prostate, basal epithelial and stromal cells appear similar in cytomorphology and share several cell surface markers. Their total gene expression ...
Comparative transcriptome analysis of early somatic embryo formation and seed development in Brazilian pine, Araucaria angustifolia (Bertol.) Kuntze
(SpringerDordrecht, 2014-06-11)
Somatic embryogenesis (SE) is a method for producing embryos in vitro and is considered a highly promising approach for micropropagation and germplasm conservation. However, the application of SE for genetic breeding and ...
First Comparative Transcriptomic Analysis of Wild Adult Male and Female Lutzomyia longipalpis, Vector of Visceral Leishmaniasis
(Public Library Science, 2013-03-12)
Leishmaniasis is a vector-borne disease with a complex epidemiology and ecology. Visceral leishmaniasis (VL) is its most severe clinical form as it results in death if not treated. In Latin America VL is caused by the ...
A comparative in silico linear B-cell epitope prediction and characterization for South American and African Trypanosoma vivax strains
(2018-01-01)
Trypanosoma vivax is a parasite widespread across Africa and South America. Immunological methods using recombinant antigens have been developed aiming at specific and sensitive detection of infections caused by T. vivax. ...
Genome-wide methylation and transcriptome analysis in penile carcinoma: uncovering new molecular markers
(Biomed Central Ltd, 2015-04-18)
Background: Despite penile carcinoma (PeCa) being a relatively rare neoplasm, it remains an important public health issue for poor and developing countries. Contrary to most tumors, limited data are available for markers ...
RNA seq analysis of the head kidney transcriptome response to handlingstress in the red cusk eel (Genypterus chilensis)
(Elsevier, 2017)
Stress is a primary contributing factor of fish disease and mortality in aquaculture. We have previously reported
that the red cusk-eel (Genypterus chilensis), an important farmed marine fish, demonstrates a handling-st ...
Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing
(BMC Genomics, 12:259, 2011, 2011)
Background: A long term research goal of venomics, of applied importance for improving current antivenom
therapy, but also for drug discovery, is to understand the pharmacological potential of venoms. Individually ...