Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences

dc.creatorGräf, Tiago
dc.creatorDelatorre, Edson
dc.creatorBello, Gonzalo
dc.date2020-03-20T18:10:38Z
dc.date2020-03-20T18:10:38Z
dc.date2020
dc.date.accessioned2023-09-26T20:51:10Z
dc.date.available2023-09-26T20:51:10Z
dc.identifierGRÄF, Tiago; DELATORRE, Edson; BELLO, Gonzalo. Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences. Memórias do Instituto Oswaldo Cruz, v. 115, n. e190461, p. 1-5, 2020.
dc.identifier0074-0276
dc.identifierhttps://www.arca.fiocruz.br/handle/icict/40431
dc.identifier10.1590/0074-02760190461
dc.identifier1678-8060
dc.identifier.urihttps://repositorioslatinoamericanos.uchile.cl/handle/2250/8865037
dc.descriptionCNPq
dc.descriptionFAPERJ
dc.descriptionPhylogenetic analyses were crucial to elucidate the origin and spread of the pandemic human immunodeficiency virus type 1 (HIV-1) group M virus, both during the pre-epidemic period of cryptic dissemination in human populations as well as during the epidemic phase of spread. The use of phylogenetics and phylodynamics approaches has provided important insights to track the founder events that resulted in the spread of HIV-1 strains across vast geographic areas, specific countries and within geographically restricted communities. In the recent years, the use of phylogenetic analysis combined with the huge availability of HIV sequences has become an increasingly important approach to reconstruct HIV transmission networks and understand transmission dynamics in concentrated and generalised epidemics. Significant efforts to obtain viral sequences from newly HIV-infected individuals could certainly contribute to detect rapidly expanding HIV-1 lineages, identify key populations at high-risk and understand what public health interventions should be prioritised in different scenarios.
dc.formatapplication/pdf
dc.languageeng
dc.publisherInstituto Oswaldo Cruz, Ministério da Saúde
dc.rightsopen access
dc.subjectHIV-1
dc.subjectFilogenética
dc.subjectFilogeografia
dc.subjectClusters de transmissão
dc.subjectHIV-1
dc.subjectPhylogenetics
dc.subjectPhylogeography
dc.subjectTransmission clusters
dc.titlePhylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences
dc.typeArticle


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